CI01000054_04924205_04945546


Basic Information

Item Value
gene id CI01000054_04924205_04945546
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 4924159 ~ 4945841 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_04924205_04945546.mRNA
CTTTTAAAACCATCTGATAACCGTGCCTGCCAAAAAAAAGCCCACCATGAGCGCCTCTTTTAATCCTGACAGAACGGGACTCGTGAGGACAGAGTGCAGATGTACATTTAACGGGACGAGGAAACTGGATGGTATAAGGATTTTTGCGCTAATGAAGGTGGGAGTACAGGCGCATCACTGGAGCGGGGTGCTGTTCTTCTATATGGGGCTGCTGGCTGCATCGGTTAAGGAATCTTTGATAGTCGATGGCACTCGACTTCATAAAATGGTCAAAATGTCACGAAACCGATGCATTTCCATGATGCAACTTGGTGTGCCCAATTTACAGCAGAGCTATGGCAGCAAAGCTAAAGGGAATGCATTTCCAGAGATTGTAAAGATTATCTGCTATGGCTGGCAAAGCATTAACCTCAACTTTAATTTTGTCAGAAGTGGGAGGTTTCACCTGGATATGTTTGCTACATTCCATGTCTGCCTTTTCGGTTATATATATTTAACAGGTGCGGGCAGACAGATAACAGTAATTTTCTATTATGAATCTTATGCTTTTGCCAAACAATGTCATGCAAAGACTGATTCCAAGTACAGCACGGCAGCGATCGATTTATCAAAGTGTCATGCCGAGGCGCTGCAGCCCCGTAGCAGCAAAACAACAGCGGAAGCAAAACAAACATTGGTTGACTCTGGAGGTGGTCTCTGCAGTCGTGCTAAACAAGCTCAAAACTGCAGTCACACACTACACAGTCCAAATGGGACAATAGAAAGCCCCGGATACCCGTATGGATATCCCAACTACGCCAACTGCACATGGGTGATTGTGGCACAGGAACACAACCGGATACAGTTGGTATTTCAAGGCTTTGCCTTAGAGGAGGACTTTGACATCCTTTCAGTCTACGATGGGCAACCCAGTCCAACAAATTTACGGACACGGTAAATACAGGACACTTTATTATTCTGTGTGTGTAAATGCCAGATCATATCTCTTGGAATTGCTAGCCAACATTACTTTCCTAACAGTTTGAACTGTGTGAAATGTGTGCGTGAACTTTGGATTTACTTAAGTGTCCCAAAACTTGTTTAAAGCACACCGAATGGAACGAAAATTTCATTTCAGGTCTGTATCTAATGTCCTGAACATTGAAGTCCTCAAATTGATTCAGCGCTTTTGACTTTATCACCGTCGTGAGTCTGAATTTCTCCCTTGTATACTCTCTGAAAATAAGAAGAAA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_04924205_04945546.mRNA True 1232 mRNA 0.43 6 4924159 4945841

Neighbor

gene id symbol gene type direction distance location
CI01000054_04658039_04659082 NA coding upstream 264458 4657991 ~ 4659701 (+)
CI01000054_04453321_04456780 ILF2, ILF2.L coding upstream 467051 4453321 ~ 4457108 (+)
CI01000054_04372172_04374454 NA coding upstream 549258 4371425 ~ 4374901 (+)
CI01000054_04248925_04249335 NA coding upstream 674572 4248359 ~ 4249587 (+)
CI01000054_03955331_03962388 NA coding upstream 961764 3955331 ~ 3962395 (+)
CI01000054_04962081_04977729 NA coding downstream 16089 4961930 ~ 4977937 (+)
CI01000054_05145255_05217807 CSMD2 coding downstream 199270 5145111 ~ 5217811 (+)
CI01000054_05402279_05408977 TRAPPC3.S, TRAPPC3, TPPC3 coding downstream 455606 5401447 ~ 5409085 (+)
CI01000054_05409518_05413525 NA coding downstream 463461 5409302 ~ 5413987 (+)
CI01000054_05538535_05543989 COL8A2 coding downstream 591567 5537408 ~ 5545034 (+)
G232094 NA non-coding upstream 31117 4892757 ~ 4893042 (+)
G232077 NA non-coding upstream 87641 4836279 ~ 4836518 (+)
G232052 NA non-coding upstream 147172 4776670 ~ 4776987 (+)
G232050 NA non-coding upstream 151180 4772738 ~ 4772979 (+)
G232048 NA non-coding upstream 163942 4759983 ~ 4760217 (+)
G232116 NA non-coding downstream 156385 5102226 ~ 5181459 (+)
G232293 NA non-coding downstream 314155 5259996 ~ 5260762 (+)
G232368 NA non-coding downstream 411400 5357241 ~ 5357672 (+)
G232379 NA non-coding downstream 454527 5400368 ~ 5401112 (+)
G232443 NA non-coding downstream 472791 5418632 ~ 5418869 (+)
G231863 NA other upstream 473429 4407152 ~ 4450730 (+)
CI01000054_03848427_03914231 NA other upstream 1010613 3848427 ~ 3914231 (+)
G230689 NA other upstream 1836767 3078502 ~ 3087392 (+)
CI01000054_02289802_02330591 SLC25A13 other upstream 2619777 2289802 ~ 2330981 (+)
CI01000054_01725792_01726688 NA other upstream 3197366 1725627 ~ 1726793 (+)
CI01000054_05608892_05634793 RNF19B other downstream 677174 5608457 ~ 5634804 (+)
G232558 NA other downstream 1047819 5993660 ~ 6041863 (+)
CI01000054_06305908_06312122 NA other downstream 1358466 6305908 ~ 6312163 (+)
G232659 NA other downstream 1429009 6374850 ~ 6375894 (+)
G232870 NA other downstream 1942071 6887912 ~ 6888503 (+)

Expression


Co-expression Network