Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000054_05145255_05217807 |
| gene name | CSMD2 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 5145111 ~ 5217811 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| csmd2 | Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CSMD2 (CUB and Sushi multiple domains 2). |
| id | name | namespace |
|---|---|---|
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| K17495 | CSMD; CUB and sushi domain-containing protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000054_05145255_05217807.mRNA | True | 6835 | mRNA | 0.52 | 44 | 5145111 | 5217811 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000054_04962081_04977729 | NA | coding | upstream | 167174 | 4961930 ~ 4977937 (+) |
| CI01000054_04924205_04945546 | NA | coding | upstream | 199270 | 4924159 ~ 4945841 (+) |
| CI01000054_04658039_04659082 | NA | coding | upstream | 485410 | 4657991 ~ 4659701 (+) |
| CI01000054_04453321_04456780 | ILF2, ILF2.L | coding | upstream | 688003 | 4453321 ~ 4457108 (+) |
| CI01000054_04372172_04374454 | NA | coding | upstream | 770210 | 4371425 ~ 4374901 (+) |
| CI01000054_05402279_05408977 | TRAPPC3.S, TRAPPC3, TPPC3 | coding | downstream | 183636 | 5401447 ~ 5409085 (+) |
| CI01000054_05409518_05413525 | NA | coding | downstream | 191491 | 5409302 ~ 5413987 (+) |
| CI01000054_05538535_05543989 | COL8A2 | coding | downstream | 319597 | 5537408 ~ 5545034 (+) |
| CI01000054_05567094_05576916 | PTP4A1, PTP4A2.L, TP4A2, PTP4A2B, PTP4A2 | coding | downstream | 349283 | 5567094 ~ 5577023 (+) |
| CI01000054_05579068_05592326 | ANLN | coding | downstream | 361257 | 5579068 ~ 5592503 (+) |
| G232094 | NA | non-coding | upstream | 252069 | 4892757 ~ 4893042 (+) |
| G232077 | NA | non-coding | upstream | 308593 | 4836279 ~ 4836518 (+) |
| G232052 | NA | non-coding | upstream | 368124 | 4776670 ~ 4776987 (+) |
| G232050 | NA | non-coding | upstream | 372132 | 4772738 ~ 4772979 (+) |
| G232048 | NA | non-coding | upstream | 384894 | 4759983 ~ 4760217 (+) |
| G232293 | NA | non-coding | downstream | 42185 | 5259996 ~ 5260762 (+) |
| G232368 | NA | non-coding | downstream | 139430 | 5357241 ~ 5357672 (+) |
| G232379 | NA | non-coding | downstream | 182557 | 5400368 ~ 5401112 (+) |
| G232443 | NA | non-coding | downstream | 200821 | 5418632 ~ 5418869 (+) |
| G232467 | NA | non-coding | downstream | 256234 | 5474045 ~ 5474333 (+) |
| G231863 | NA | other | upstream | 694381 | 4407152 ~ 4450730 (+) |
| CI01000054_03848427_03914231 | NA | other | upstream | 1231565 | 3848427 ~ 3914231 (+) |
| G230689 | NA | other | upstream | 2057719 | 3078502 ~ 3087392 (+) |
| CI01000054_02289802_02330591 | SLC25A13 | other | upstream | 2840729 | 2289802 ~ 2330981 (+) |
| CI01000054_01725792_01726688 | NA | other | upstream | 3418318 | 1725627 ~ 1726793 (+) |
| CI01000054_05608892_05634793 | RNF19B | other | downstream | 405204 | 5608457 ~ 5634804 (+) |
| G232558 | NA | other | downstream | 775849 | 5993660 ~ 6041863 (+) |
| CI01000054_06305908_06312122 | NA | other | downstream | 1086496 | 6305908 ~ 6312163 (+) |
| G232659 | NA | other | downstream | 1157039 | 6374850 ~ 6375894 (+) |
| G232870 | NA | other | downstream | 1670101 | 6887912 ~ 6888503 (+) |
