CI01000054_05642130_05679022


Basic Information

Item Value
gene id CI01000054_05642130_05679022
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5641126 ~ 5682561 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_05642130_05679022.mRNA
TTATAAAAGGTGCATCTTTAAAATTGCTTTCAGGACATAGTAATGTTTCTTTTTTTTTTCTAAAGGTAAATATAGGTTTAGACTAGCAGAAGCAGGTGGTAGGGAGTGATGCACCTCTCGGCTTTAACCAGTCGGGGGCGACAAAACCCAAGAATCAGACCCAATAACATCAGCCATTGTCACCATGAATTTCCTGCGCTGGATGTGCCTGGCGTGGCTGTGGAAGGAAGGGAGGGATGGAGGAGGAGAGCGCAGGCACTGCGGGAAGAATAGAGAAACATGAACCCCATTCGCACAGGGGAAAATAGAGGGAGGACTGAGACACACGCCGTGTGATTATTGTAGAAGCGGCCATTACATTGAGCAGCACGGATGGAAAAAAACATAATATAGCTGGTACCGGTGAGTCAAGAGCGCATTGACAAAGGAATATAAGAAGCACTAGCCGGATACCGTTTCATTGAGGCCTCGTATCTGCTTTCGGAAGGAGCCGAACGGACCGCCCACCGCACATAGACACACATACTTGAGAAGCGCACACATATAAACCCAATCACCGGCTCGCACGCGCTACAATGGACTTTAAATACGATAACCGCTGCGATTCTGATCTAAATCAATGAAAGATGGGTTTATTTAGTTGTACATCTAGATTTAAACCTTTTCTGACGTTTAACCGTCATATATGATAAGTGATATTTACTCTAAAGATAGATATTTACGTATTTTTATTTATCTAATCTTGTTTTGACCGCACGTTTATAGGAACCGCTGGTCCAAAGTAGCTTTGTTTCACTAGATTTATTTAATTAACCGTGTTTACGAACGCCAAATATAATATAATACGCTTTAGAAACATACTGAAACGTGAATAAGTCGGTATCCACTGTGGATATTTAACCCAAACCGGACTTGACAGCTGTTGTCGGACGACTGGGATCCACCGTCCTGGATTACTCTATCAGCGGGCCGCTGTGAGTCGGCCAGCGGGAGTGAGAGACGCTATGGCCGGCTACATCCCGGGCTTACTCCCGGCGAATCACTCCCAGGAAAAGGAGTTCGCACAGGCGTATGAGGATGTGCTGGAGAGATATAAAGAGCCTGAGTCACGCAGGGAGTACAACACATGCTCGAGCTCTGGCAGTGACATCACCTGTCTTGTGGTCAAAGTACAGTTCCTCTATCCGGCTCTAAAACACGGCACTCTCTCAGAGCTACCAGACAGCCGGCTGTTCCTTCAGTTTTGCTTTCTCCTTTATTGCCGTGGCGAAATGAGCGCTGCGGCATCATACCGACAGTATCTTCAGGAACTCGAGGAAAAGAAAGATCATGGGGCCGACATTTGCACATGGCTTTTAGTGGATGGAATCAACCGCAAGTGTGTTGACCATATGGAGCAACACGGGGTGGGTGTGGAGGTAAACCCCTTTGGACCAGAGTACTCTGGTGTTACTGATCAGCTAACTATTAGCCCTGATGTGTTTCCTACCCTTGATTATATCATCACATACCATAAAGAGCCTCTGATCTGCCGCCAGACCTCACAGCCAACCAAATTTACTCACACAGTGGCAGACCTCCCTGCCACTGTCACTGGCTCTGTGCCGGAGTGCCTGGCCTGGATCATGTTAGTTACATCAAGAGTTGTAAAATATCAGACCAAAGTTCAGACTAGTTTGTTTGCTTGTGTAATTGTATGTGTGAGTTTGTGTCAGTATGAGCAGGAGTTCTCAGCAGTCCTCTGAGCCTTGCTCATTTTCATACTGCAACTCTGTTCCTCCCCTACTGACTCAAACAAGACATTAGTGATAGTGACTCCTCACGCGAACATTTTGTCTTTCCGCCAGTCCTCCCATGTTTCAGCTCAGGGGCTTTGGTTTCAAAACCTGTCATTTCCTTTTCATACCAGTCTTTGTTGTTTTTAGATGCATTTTTTTTTTTTTTAATTATAGATCAGTTCTGCTTGCTTCATTTTGAGAAGATTTAGGCTTGTTGCATGTGTTTTGGGTGCTTTGACATTCCATATTCCTTGCAGTGTATACTGTTCCTAATCATAATTCATTTTAGTTCTGAACAATTTAAGCAAAACTTAACTCAGCTGATATAATAATTTTAGAAGGTCACCTGATGGACGTTATCTTGCATGTTGTTGTGGCTTATGTATTAACAACCTTTCAAGGCAGCTAAGTTCATATCAGTTTTTGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_05642130_05679022.mRNA False 2207 mRNA 0.44 7 5641126 5679484

Neighbor

gene id symbol gene type direction distance location
CI01000054_05608892_05634793 RNF19B coding upstream 6322 5608457 ~ 5634804 (+)
CI01000054_05595391_05599507 AK2 coding upstream 41431 5594953 ~ 5599695 (+)
CI01000054_05579068_05592326 ANLN coding upstream 48623 5579068 ~ 5592503 (+)
CI01000054_05567094_05576916 PTP4A1, PTP4A2.L, TP4A2, PTP4A2B, PTP4A2 coding upstream 64103 5567094 ~ 5577023 (+)
CI01000054_05538535_05543989 COL8A2 coding upstream 96092 5537408 ~ 5545034 (+)
CI01000054_05696772_05708538 NA coding downstream 16865 5696093 ~ 5708637 (+)
CI01000054_05713420_05771550 MACF1, MACF1A coding downstream 33936 5713420 ~ 5771745 (+)
CI01000054_05772612_05808901 MACF1, MACF1A coding downstream 92968 5772452 ~ 5809366 (+)
CI01000054_05813838_05819498 BMP8A coding downstream 133280 5812764 ~ 5819740 (+)
CI01000054_05825039_05827325 PSMA2, PSA2 coding downstream 144322 5823806 ~ 5827378 (+)
G232467 NA non-coding upstream 166793 5474045 ~ 5474333 (+)
G232443 NA non-coding upstream 222257 5418632 ~ 5418869 (+)
G232379 NA non-coding upstream 240014 5400368 ~ 5401112 (+)
G232368 NA non-coding upstream 283454 5357241 ~ 5357672 (+)
G232293 NA non-coding upstream 380364 5259996 ~ 5260762 (+)
G232519 NA non-coding downstream 158799 5838283 ~ 5838874 (+)
G232521 NA non-coding downstream 180136 5859620 ~ 5859877 (+)
G232526 NA non-coding downstream 187383 5866867 ~ 5867089 (+)
G232530 NA non-coding downstream 190714 5870198 ~ 5870423 (+)
G231863 NA other upstream 1190396 4407152 ~ 4450730 (+)
CI01000054_03848427_03914231 NA other upstream 1727580 3848427 ~ 3914231 (+)
G230689 NA other upstream 2553734 3078502 ~ 3087392 (+)
CI01000054_02289802_02330591 SLC25A13 other upstream 3336744 2289802 ~ 2330981 (+)
G232558 NA other downstream 314176 5993660 ~ 6041863 (+)
CI01000054_06305908_06312122 NA other downstream 624823 6305908 ~ 6312163 (+)
G232659 NA other downstream 695366 6374850 ~ 6375894 (+)
G232870 NA other downstream 1208428 6887912 ~ 6888503 (+)
G233024 NA other downstream 1888039 7567523 ~ 7609893 (+)

Expression


Co-expression Network