Item | Value |
---|---|
gene id | CI01000054_05713420_05771550 |
gene name | MACF1, MACF1A |
gene type | coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000054 |
NCBI id | null |
chromosome length | 13006764 |
location | 5713420 ~ 5771745 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
symbol | description |
---|---|
macf1a | Predicted to enable structural molecule activity. Involved in organelle disassembly. Acts upstream of or within oocyte animal/vegetal axis specification. Located in cell cortex and mitochondrial cloud. Is expressed in hair cell anterior macula; inner ear; macula; oocyte stage I; and posterior crista. Human ortholog(s) of this gene implicated in lissencephaly 9 with complex brainstem malformation. Orthologous to human MACF1 (microtubule actin crosslinking factor 1). |
macf1 | Enables actin filament binding activity and microtubule minus-end binding activity. Involved in several processes, including Golgi to plasma membrane protein transport; positive regulation of axon extension; and regulation of focal adhesion assembly. Located in several cellular components, including Golgi apparatus; cytoskeleton; and ruffle membrane. Implicated in lissencephaly 9 with complex brainstem malformation. |
id | name | namespace |
---|---|---|
GO:0003779 | actin binding | molecular_function |
id | description |
---|---|
K19827 | MACF1; microtuble-actin crosslinking factor 1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
CI01000054_05713420_05771550.mRNA | True | 18099 | mRNA | 0.48 | 57 | 5713420 | 5771745 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000054_05696772_05708538 | NA | coding | upstream | 4783 | 5696093 ~ 5708637 (+) |
CI01000054_05642130_05679022 | NA | coding | upstream | 33936 | 5641126 ~ 5682561 (+) |
CI01000054_05608892_05634793 | RNF19B | coding | upstream | 78616 | 5608457 ~ 5634804 (+) |
CI01000054_05595391_05599507 | AK2 | coding | upstream | 113725 | 5594953 ~ 5599695 (+) |
CI01000054_05579068_05592326 | ANLN | coding | upstream | 120917 | 5579068 ~ 5592503 (+) |
CI01000054_05772612_05808901 | MACF1, MACF1A | coding | downstream | 707 | 5772452 ~ 5809366 (+) |
CI01000054_05813838_05819498 | BMP8A | coding | downstream | 41019 | 5812764 ~ 5819740 (+) |
CI01000054_05825039_05827325 | PSMA2, PSA2 | coding | downstream | 52061 | 5823806 ~ 5827378 (+) |
CI01000054_05830867_05831873 | NA | coding | downstream | 59064 | 5830809 ~ 5831953 (+) |
CI01000054_05841632_05851621 | NDRG1A | coding | downstream | 69751 | 5841496 ~ 5852527 (+) |
G232499 | NA | non-coding | upstream | 30859 | 5627572 ~ 5627795 (+) |
G232467 | NA | non-coding | upstream | 239087 | 5474045 ~ 5474333 (+) |
G232443 | NA | non-coding | upstream | 294551 | 5418632 ~ 5418869 (+) |
G232379 | NA | non-coding | upstream | 312308 | 5400368 ~ 5401112 (+) |
G232519 | NA | non-coding | downstream | 66538 | 5838283 ~ 5838874 (+) |
G232521 | NA | non-coding | downstream | 87875 | 5859620 ~ 5859877 (+) |
G232526 | NA | non-coding | downstream | 95122 | 5866867 ~ 5867089 (+) |
G232530 | NA | non-coding | downstream | 98453 | 5870198 ~ 5870423 (+) |
G232532 | NA | non-coding | downstream | 100628 | 5872373 ~ 5872855 (+) |
G231863 | NA | other | upstream | 1262690 | 4407152 ~ 4450730 (+) |
CI01000054_03848427_03914231 | NA | other | upstream | 1799874 | 3848427 ~ 3914231 (+) |
G230689 | NA | other | upstream | 2626028 | 3078502 ~ 3087392 (+) |
CI01000054_02289802_02330591 | SLC25A13 | other | upstream | 3409038 | 2289802 ~ 2330981 (+) |
G232558 | NA | other | downstream | 221915 | 5993660 ~ 6041863 (+) |
CI01000054_06305908_06312122 | NA | other | downstream | 532562 | 6305908 ~ 6312163 (+) |
G232659 | NA | other | downstream | 603105 | 6374850 ~ 6375894 (+) |
G232870 | NA | other | downstream | 1116167 | 6887912 ~ 6888503 (+) |
G233024 | NA | other | downstream | 1795778 | 7567523 ~ 7609893 (+) |