CI01000054_05813838_05819498 (BMP8A)


Basic Information

Item Value
gene id CI01000054_05813838_05819498
gene name BMP8A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5812764 ~ 5819740 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_05813838_05819498.mRNA
ATATAAATATAGTTTTCTTATTACCCTAGCCATAAGAACGCAGTTCTAGTCTGTGCAAAGGCTGGATCACATCTTCATCCCAAACCACATGATAATTGCCAGCAATTTGTGAGGTATGTGTGGAAGATGGGACGGTTTGATAGGGTAGATGGAGACTGAGGTGAGAAGGGCTCAAGGAAGAGAGGGCGGAGGATTCAGACATTGGAAACACTCCCTCTGCGTAAGCATGTATCTTGGAGGGAAGGAGGTCACCCGTGTTCAGATTATGCCTTAAACGCAAGCAGCACGCAGGCTGAGAATACCACAGTCCACTGGGATCTCACAACTTCAAAATCCAGAAAAACGTTTGGGGACAGTAACACTATTCTGGTCAACAAATCATTTTCTTACTCAAAATTGTGAAATATTTTTCTTCATTTTTCAGGAGACTAGGATATTTTTGCACACTGGATTAAACATTTAAAACCAGCATTGATTGATCACTGCAAGAGAGTTTTCTAACTTTTTGTTTTTCAATTAAACCTAAAGGATTTCATCAGCTCGGAGTAGCGTCTCGCATCTTCTCAAAAGGAGCAGAAGCAGGTGTTGATTTTGATCCAGGAACCTTTGAAGAAAGAACCTTTGAAGCCTGGCTCTCTGTTTTTATTTACTCTACCTAAAGACTTTAATTTCACATTGTGCTTAGTCCTTCCAACTTCGAGATCACCTTTGAAAGGAGCTGGGCTTCTAGAAAGACGTGTTTGTTTTCTCTTCCAGTTTCTAGGACATTGTTTGTCGTCCAGCTCCGTAAGCGCACTATAGATTATGAGAGAAGCCCTGTGGTTTGGTAAATAAAGTGACAGCATGAGGAACGACTGTCAAGAGGCGATAAACTGAGCAGCTCGTAGCAGTAAACATTGCACTCTTCCAAATAACGATGACTGCTGTGGAATCTGAGTGGCTTAGGCATTTGAGTGTCGTTCAGAGTTGAACTTCAAGACAGTAGTCAGACCATTCCAGAGAAGACCGACGTCGGGTAAACACCCAGAGGTTTTGGAGGGACAAATACGAGGACGATCTTTATAGACGGCTGCAATGGAGCAGAGCTCTTCTGCCACACCAATGGACAAACAAGAGCGTGTGGTTGAGTTTGTGTCCTCATGCCACAGCAGAGGGAGGAAGGAGAGCTGTGGCAAGCGAACCCGAGGCCGGCAGCGACTGTTCCCTCTTGCCATCTTTCTCCCTCTGTGCATGTTGCTGTGTGTTTGGGGTCAGGTAGAAGGAGTGGTTCATTCCAGCTTCCGTAGGCTCAGCGGCCGTGAAAAGAAGGAGATGCAGAAGGAGATTTTATCCATTCTGGGTCTACCCGGGCGGCCGAGACCTCACCCGCCGCTGCGGCCCCCTTCCTCTGCCCCGCTCTTCATGCTGGACCTTTACCATGCTGTGTCATCTGAGGCCGATGATGGACCAGGCTTGGGCTTCACTCCGGAAGTGGTCAGTCAAGCCGCGCTGCCCACCTTAAGCACGCACACGCCACCCCTTGGCACGGTGAGACTGTCAGGGCTTGTAGTGTGTATTGACAATGACCCACAATCACTCCATCATCTCTTCCTGTCTCAGCCCAAACACAGACGATACTTATCTGTCCGAAACAAACAACAGTTTAACATCCTATTTACAATTACTGCTTCTCATTCCATATCTTTCTGCCCCATTATCATTGTGGAGCAGGAAAAGGATCTGCTCCAGCCTCGGCCGTACTGGAAGGAGTTCCGCTTCGATCTCACTCCGCTTCCTCAGGGAGAGACGGTCACCGCGGCTGAGTTTCGCATCTATAAAACTCTTACCGTGGGTTGGCGTGCAAACCGCACCCTCCATATATCTGTCTATGAAATCCAGAGGGAGAAAAGACACAGGGAGCCTGAGCTGGTGTTGCTGGACATGCAGTCTGTGCCTGCGGGTCAGGAGGGCTGGTTGGCATTTGATGTGACTTCTGCGAGCAATCGCTGGCTTCTACACCCTCGAAGCAATCTGGGCATCCGCCTTTACGTGGAAACTGAGGAGGACCGGTCGCTGTCAGCCGCATGGGTGGGTCTGGTGGGTCGGCGCGGACCGCGCTCTAAGCAGCCTTTCATGGTGACGTTCTTCAGAGCTAGTCAAGCCCCTTGCCGCCCACCTCGTGCTCTGAGACACAACAATCCACGCAAGAAAAAAACCAAGTATGACCTGCCACACCCAAACAGACCCGGCATATTTGACCAAAATCATGCCAGCAGTGGACGCCAGGCCTGTAAGAAACATGAACTCTATGTCAGCTTCAGCGACCTTGGCTGGAAGGACTGGGTTTTGGCCCCTCCAGGTTACTCTGCGTATTATTGTGATGGGGAATGTGATTATCCTCTGGGCGCTTGTATGAATGCCACAAACCATGCCACGATCCAGCTGCTGGTTCACCTTCTAAGACCAGATGAAGTGCCCAAAGCCTGCTGCGCCCCAACCAAACTCAGTCCCATCTCTGTGCTCTTCTATGACGACAACAACAACGTTATTCTCAAAAAACATCGAAATATGGTGGTCAAGAACTGTGGCTGCTTATAACCTCCTGTACACAGTATTTCTATTGTACATTCAAGTTTTAAATCTGAAACAAATGTAGATTTATTATAATACTCTGAGGCACCATTTGTAATATACAGTTATTAAAATTTTAACCAAATTTGAGTGCTCTTACCTGTCCCAAATGATTGACAAATGATAGTTATTGAAGTGTCATGATGGTTTCTGAGCATATTTGTCACAGTTTTATTGTGAGTGGATTTAAGGTTGGAATCCATCCCATA

Function

symbol description
bmp8a Predicted to enable BMP receptor binding activity and cytokine activity. Predicted to be involved in BMP signaling pathway; SMAD protein signal transduction; and positive regulation of pathway-restricted SMAD protein phosphorylation. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in caudal fin. Orthologous to several human genes including BMP8A (bone morphogenetic protein 8a).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005125 cytokine activity molecular_function

KEGG:

id description
K16622 BMP8; bone morphogenetic protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_05813838_05819498.mRNA True 2819 mRNA 0.47 8 5812764 5819740

Neighbor

gene id symbol gene type direction distance location
CI01000054_05772612_05808901 MACF1, MACF1A coding upstream 3398 5772452 ~ 5809366 (+)
CI01000054_05713420_05771550 MACF1, MACF1A coding upstream 41019 5713420 ~ 5771745 (+)
CI01000054_05696772_05708538 NA coding upstream 104127 5696093 ~ 5708637 (+)
CI01000054_05642130_05679022 NA coding upstream 133280 5641126 ~ 5682561 (+)
CI01000054_05608892_05634793 RNF19B coding upstream 177960 5608457 ~ 5634804 (+)
CI01000054_05825039_05827325 PSMA2, PSA2 coding downstream 4066 5823806 ~ 5827378 (+)
CI01000054_05830867_05831873 NA coding downstream 11069 5830809 ~ 5831953 (+)
CI01000054_05841632_05851621 NDRG1A coding downstream 21756 5841496 ~ 5852527 (+)
CI01000054_05875546_05877938 SLA1 coding downstream 55739 5875479 ~ 5878322 (+)
CI01000054_05926683_05953807 CTNNAL1 coding downstream 106943 5926683 ~ 5953955 (+)
G232499 NA non-coding upstream 130203 5627572 ~ 5627795 (+)
G232467 NA non-coding upstream 338431 5474045 ~ 5474333 (+)
G232443 NA non-coding upstream 393895 5418632 ~ 5418869 (+)
G232379 NA non-coding upstream 411652 5400368 ~ 5401112 (+)
G232519 NA non-coding downstream 18543 5838283 ~ 5838874 (+)
G232521 NA non-coding downstream 39880 5859620 ~ 5859877 (+)
G232526 NA non-coding downstream 47127 5866867 ~ 5867089 (+)
G232530 NA non-coding downstream 50458 5870198 ~ 5870423 (+)
G232532 NA non-coding downstream 52633 5872373 ~ 5872855 (+)
G231863 NA other upstream 1362034 4407152 ~ 4450730 (+)
CI01000054_03848427_03914231 NA other upstream 1899218 3848427 ~ 3914231 (+)
G230689 NA other upstream 2725372 3078502 ~ 3087392 (+)
CI01000054_02289802_02330591 SLC25A13 other upstream 3508382 2289802 ~ 2330981 (+)
G232558 NA other downstream 173920 5993660 ~ 6041863 (+)
CI01000054_06305908_06312122 NA other downstream 484567 6305908 ~ 6312163 (+)
G232659 NA other downstream 555110 6374850 ~ 6375894 (+)
G232870 NA other downstream 1068172 6887912 ~ 6888503 (+)
G233024 NA other downstream 1747783 7567523 ~ 7609893 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014937 bmp8a coding NC_007130.7 CM002903.2 35019304 ~ 35035857 (-)