CI01000054_05825039_05827325 (PSMA2, PSA2)



Basic Information


Item Value
gene id CI01000054_05825039_05827325
gene name PSMA2, PSA2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5823806 ~ 5827378 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000054_05825039_05827325.mRNA
GTATAAATGGCGAGCAGTGTCTTTCCCAGGAAGTATAACCCCGTTTTTTAAAAAACAAAATCACAGTAGAAACCGCGAAGATCACATTAGCTAGTAACTTAGCTCATCCGCCTTCTTTAAAACTGATCTAAGCCGTACAGTTGCAATATACGAAACGATCGAATTACAATTAACATCAACTAAACCACAAATGCCTGTAAAAACAACAGAAATGAGATTTATAAGATTAAATCTGGCAGATTCATAAGTATTTAGAGACAATACCTCGGCGTTAAGACACGGTAGGAAGTCAAGCTCAACTGACGCAATTCAGCAGCTTCCGTCAGAAGCACTTACATAATAAAAGTTTTTCTCTGCCACTCAAATGTCGAGATTTAAATATTTTATCCTCAGGCCAGTGATGGACGAGTTGGCTGAGTACTTTTTGTATTAATTTTATTAATTGTGTACATGGGTTTTATTCGTTGTTTTGGAGTATCCCAAACGAAAATAGCAGAGCGAGGCTAAAAAATGTCACTTATTTATCTCTGTGTGGCTGAAACGAAGCATTCTGAATCTGCAAATCAAAAGAATCAATTAATTCGTAAAATGATTCACTGATTCAAATGTTCCGAACAGGTTTTAAACATACGCGCTAAGGACATCTGCTGGTTGTACGCGTGTTAGTGGATTGGAAAGACTTGTTTTATTGCAATCTCTTGAACAATGAACATACAAATGCAATAATAACATATTATTTACATCAAATCAAATACTTTGAGAATCAAATACAATAATAATAATAATAATAATAATAATAATAATAATTTAAAAAAAAAACATTGAAAAAATCGTATCTCTATAATCAAGTAAAATCCAGTTTGTGCTTAAGGAATAGAAAGACTCGAAACACTAGCAATTAAAATAATGTTTTGGAAATTGCCGCCACGTAAATCTTTTTTAAAAGAGTCTAAAATATCTTTACACATTTCTGAATCTTTGCAGAATGTATAGTATGGATCTTAATATATGATAAATGTATTGGTTTTAAATGAAGTTTGTGTTCATGCCAATACAATAGTCGTATTTTATTATGTTGTTAATTTTATTCCTCAGAAACGTACGAACTGAAAATGTAATACAGAATGAGCGGTCGGTGTATGTATTCAGTTTACATGACTTTTATCTTGACGAGTGTGTTCACAAACATTTTGCGGAAGTTGTTTTGGTGTATTTCCGTAGCAAAAGACAAAAATGGCAGAACGAGGATACAGTTTTTCTCTCACAACATTTAGCCCTTCTGGCAAACTGGTGCAGATTGAATATGCTCTGTCCGCTGTAGCAGCCGGTGCTCCATCTGTAGGAATCAAAGCATCAAATGGAGTTGTGCTGGCAACTGAGAAGAAACAGAAGTCCATATTGTACGATGAACAGAGCGTGCACAAAGTTGAACCAATAACCAAACACATCGGCATGGTGTACAGTGGAATGGGTCCTGACTACAGGGTGCTGGTCAGAAGAGCAAGAAAGCTGGCTCAGCAGTATTTCCTGGTATACCAAGAGCCAATCCCCACAGGCCAGCTGGTACAGAGAGTGGCTTCTGTTATGCAAGAATACACACAGTCTGGAGGTGTGCGCCCATTTGGAGTCTCTCTTCTCATTGCCGGTTGGGACGAGGACCGACCATACTTGTTTCAGTCAGACCCATCGGGAGCATACTTCGCCTGGAAAGCCACAGCAATGGGAAAGAACTATGTGAATGGAAAAACGTTCCTTGAAAAAAGATATAATGAAGATCTGGAGCTTGAAGATGCTATACACACCGCCATCTTAACTTTGAAGGAAAGTTTTGAAGGGCAGATGACAGAGGACAATATTGAGGTGGGCATCTGTAATGAAGCAGGATTTCGCAGACTGTCACCTGCTGAGGTGAAGGATTACCTAGCAGCAATTGTTTAAAAACTACAGCACTACAACTGCTTACAGTTTACCATTTCGGTTTGGTTGTTTGT

Function


symbol description
psma2 Involved in response to virus. Located in extracellular exosome and nucleus. Part of proteasome complex.

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function

KEGG:

id description
K02726 PSMA2; 20S proteasome subunit alpha 2

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000054_05825039_05827325.mRNA True 1991 mRNA 0.38 8 5823806 5827378

Neighbor


gene id symbol gene type direction distance location
CI01000054_05813838_05819498 BMP8A coding upstream 4066 5812764 ~ 5819740 (+)
CI01000054_05772612_05808901 MACF1, MACF1A coding upstream 14440 5772452 ~ 5809366 (+)
CI01000054_05713420_05771550 MACF1, MACF1A coding upstream 52061 5713420 ~ 5771745 (+)
CI01000054_05696772_05708538 NA coding upstream 115169 5696093 ~ 5708637 (+)
CI01000054_05642130_05679022 NA coding upstream 144322 5641126 ~ 5682561 (+)
CI01000054_05830867_05831873 NA coding downstream 3431 5830809 ~ 5831953 (+)
CI01000054_05841632_05851621 NDRG1A coding downstream 14118 5841496 ~ 5852527 (+)
CI01000054_05875546_05877938 SLA1 coding downstream 48101 5875479 ~ 5878322 (+)
CI01000054_05926683_05953807 CTNNAL1 coding downstream 99305 5926683 ~ 5953955 (+)
CI01000054_05957906_05981499 ELP2 coding downstream 130021 5957399 ~ 5982222 (+)
G232499 NA non-coding upstream 141245 5627572 ~ 5627795 (+)
G232467 NA non-coding upstream 349473 5474045 ~ 5474333 (+)
G232443 NA non-coding upstream 404937 5418632 ~ 5418869 (+)
G232379 NA non-coding upstream 422694 5400368 ~ 5401112 (+)
G232519 NA non-coding downstream 10905 5838283 ~ 5838874 (+)
G232521 NA non-coding downstream 32242 5859620 ~ 5859877 (+)
G232526 NA non-coding downstream 39489 5866867 ~ 5867089 (+)
G232530 NA non-coding downstream 42820 5870198 ~ 5870423 (+)
G232532 NA non-coding downstream 44995 5872373 ~ 5872855 (+)
CI01000054_05608892_05634793 RNF19B other upstream 199131 5608457 ~ 5634804 (+)
G231863 NA other upstream 1373076 4407152 ~ 4450730 (+)
CI01000054_03848427_03914231 NA other upstream 1910260 3848427 ~ 3914231 (+)
G230689 NA other upstream 2736414 3078502 ~ 3087392 (+)
CI01000054_02289802_02330591 SLC25A13 other upstream 3519424 2289802 ~ 2330981 (+)
G232558 NA other downstream 166282 5993660 ~ 6041863 (+)
CI01000054_06305908_06312122 NA other downstream 476929 6305908 ~ 6312163 (+)
G232659 NA other downstream 547472 6374850 ~ 6375894 (+)
G232870 NA other downstream 1060534 6887912 ~ 6888503 (+)
G233024 NA other downstream 1740145 7567523 ~ 7609893 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location