CI01000054_05830867_05831873


Basic Information

Item Value
gene id CI01000054_05830867_05831873
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5830809 ~ 5831953 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_05830867_05831873.mRNA
ATATAAATGGAGCCTGAACTTGTCAGTCTTCAGTCTGAGTTTGGAAAAGGAGATCATCATGACTAACGGAATCAACGAAAGATTCAGCACTTTGCTGGCACAATCAAGCGTCGTTCCAAGGAAGAAGTACAAAAAATACTCTACAGGAACATACATCGGACTTATTGCTTATGCGATTCTAGATTCACCGGAGAAGATGCTCACATTCAAACAGATCATGAAGAAGCTGGAGCCATTTGTCTTCGGAGACAAAAAAGGCATTGAGAACAACATCAGAGTCTGCTTATCGTCTAACAGGTGTTTTGCAAAGGTGCCAGTCGATCCGGATTATCCAAATCCTAAAAAGAACTTCTGGAAAGTGGATGAGAGTGGCATCACTGCAAAAATGTTTCGTCGACATTTCAAATACATAATGAACGTGTTCCCTGGCCTATCCATTCAGGCAAATCGGGTGGATGAATGTGAAGATAATTCTTATGCCCCTGAGCCTCTCACGCCAGTTTGCACAGTCCAAGAAAACAAAATCGACGTCAAATTTTCAGGCCCATTTTCCATAGAATCACTACTAAAGAGCGACCGCGAAGTGAAGCGCATGCGCAGCACGCGTTTGGAGGAACATAGACGCTACATAGACCCACAGTGTGGAGCGACCAAGAGAAAAAACTTTTATGAATACAACACCGTGGAGTGTTATTACCCTGTTTCAGCAGTGGGAAGTCAGTTTGTCTCCGCAAAAAGACCTCGTATTTCTTCAGGATCTTCGTTTGGACTGTCTTCGCCTCCACAGATCACATATGATCACCCTGTTCTCCTCAGATCTCCTTTCATGTATGATGCTAGATATGTCAGGTGGTGAACTTCCAGAATGACCAAATGTAAATATTCTGAAATTGCACTTTGTTTTTGTTGTTCACTTTTCTTTTCTCTTTTTTTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_05830867_05831873.mRNA True 936 mRNA 0.42 3 5830809 5831953

Neighbor

gene id symbol gene type direction distance location
CI01000054_05825039_05827325 PSMA2, PSA2 coding upstream 3431 5823806 ~ 5827378 (+)
CI01000054_05813838_05819498 BMP8A coding upstream 11069 5812764 ~ 5819740 (+)
CI01000054_05772612_05808901 MACF1, MACF1A coding upstream 21443 5772452 ~ 5809366 (+)
CI01000054_05713420_05771550 MACF1, MACF1A coding upstream 59064 5713420 ~ 5771745 (+)
CI01000054_05696772_05708538 NA coding upstream 122172 5696093 ~ 5708637 (+)
CI01000054_05841632_05851621 NDRG1A coding downstream 9543 5841496 ~ 5852527 (+)
CI01000054_05875546_05877938 SLA1 coding downstream 43526 5875479 ~ 5878322 (+)
CI01000054_05926683_05953807 CTNNAL1 coding downstream 94730 5926683 ~ 5953955 (+)
CI01000054_05957906_05981499 ELP2 coding downstream 125446 5957399 ~ 5982222 (+)
CI01000054_05989042_05989389 NA coding downstream 157089 5989042 ~ 5989795 (+)
G232499 NA non-coding upstream 148248 5627572 ~ 5627795 (+)
G232467 NA non-coding upstream 356476 5474045 ~ 5474333 (+)
G232443 NA non-coding upstream 411940 5418632 ~ 5418869 (+)
G232379 NA non-coding upstream 429697 5400368 ~ 5401112 (+)
G232519 NA non-coding downstream 6330 5838283 ~ 5838874 (+)
G232521 NA non-coding downstream 27667 5859620 ~ 5859877 (+)
G232526 NA non-coding downstream 34914 5866867 ~ 5867089 (+)
G232530 NA non-coding downstream 38245 5870198 ~ 5870423 (+)
G232532 NA non-coding downstream 40420 5872373 ~ 5872855 (+)
CI01000054_05608892_05634793 RNF19B other upstream 206134 5608457 ~ 5634804 (+)
G231863 NA other upstream 1380079 4407152 ~ 4450730 (+)
CI01000054_03848427_03914231 NA other upstream 1917263 3848427 ~ 3914231 (+)
G230689 NA other upstream 2743417 3078502 ~ 3087392 (+)
CI01000054_02289802_02330591 SLC25A13 other upstream 3526427 2289802 ~ 2330981 (+)
G232558 NA other downstream 161707 5993660 ~ 6041863 (+)
CI01000054_06305908_06312122 NA other downstream 472354 6305908 ~ 6312163 (+)
G232659 NA other downstream 542897 6374850 ~ 6375894 (+)
G232870 NA other downstream 1055959 6887912 ~ 6888503 (+)
G233024 NA other downstream 1735570 7567523 ~ 7609893 (+)

Expression


Co-expression Network