CI01000054_05990266_06191955 (GABBR2)


Basic Information

Item Value
gene id CI01000054_05990266_06191955
gene name GABBR2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5990266 ~ 6191955 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_05990266_06191955.mRNA
ATGGCTCCGTCCCGGAGGGACTGCAGATGTGACATGATCTTTCTGTCGGGATGCCTACTCCTGTCCGTCTGGGGATTTCAACCTGCATTGGCGAAGGTTTGCAACGATTACACAAGGCACGGCCTGGACAACAACTGGTACATGAGGGATGGTGAGAAGTTGCCCATCATGGTCCTGATGCCGATGAATGAATCAGCGCTGATGAGCAGCATCAGTCAAGGCATCGAGCCGGCCGTTCAGCTGGCCATCCAGCACATCCGCGAGTCCAGGCAGTACTCCTTCTCACTCATCACCAAAATCTACGACACTGAGTGTGACAATGCAAAGGGATTGCGGGCCTTCTTTGATGCAATCTGCTACGGTCCTAAACATTTGATGATCTTTGGAGGCGTGTGTCCATCGGTGACTTCAATCATCGCTGAATCGTTGGAGGGGTGGAACCTCGTGCAGCTTTCTTTTGCGGCCACAACTCCTGTCCTGGCAGACAGGAAAAAGTATCCAAATTTCTTCAGGACGGTCCCGTCGGACAATGCTGTAAACCCCGCTGTGGTGAAGTTTCTCAACTTCTACAACTGGAGCAGAGTGGGAACCCTGACCCAGGATGTCCAGCGCTTTTCTGAGGTGCGGAATGATTTGACCAATGAGCTGGAGAAGGCAGACATCCAGATTGCAGACACTGAGAGTTTCTCTAATGATCCCTGTGTGAATGTGAAGAAACTGAAGGACAATGATGTTCGGATCATCATCGGTCAGTTTGATGAGAATCTGGCTGCTAAAGTCTTCTGCTGTGCTTATAATCTGAACATGTATGGCAGTAAGTATCAGTGGATCATCCCAGGATGGTATCAGGGGAACTGGTGGGAGCAGGCAAACTCCACAAACTGCACCACTAAGAAGCTGCTGACAGCTATGGAGGGCTATATCAGTGTGGACTTCGAGCCCCTCAGTGCCAAACAGATTAAAGGAATATCAGGAAGAACGCCACAGGAGTACGAGAGGGAGTACAACCGGGAGCGAGAGCAGAAAGGAGTGGAGGCCAGCAAGTTCCACGGCTTTGCCTACGATGGCATCTGGGTGATTGCGAAGACCCTCACACGTGTCATGGAGCTCCTCAGACACAAGGAGAGTGTCGACATGTACCATAACTTCACGGTGGATGACCGAGAGGTGGGCAAGATGGTCCTGGATGTGATGAACGAAACCAACTTCTTTGGAGTGACGGGTCAGGTGATGTTCAGGAACGGGGAACGCATGGGAACCATAAAATTCACCCAGTTTCAAGAGGGTCAAGAGGTGAAGGTGGGCGAGTACAATGCCATTGCAGATATACTGGACCTTATCAACAACACCATCAGGTTCCAAGGTGTTGAACCACCGAAGGATCGGACGTTTGTGCGTCTGCAGCGCCGGCAAATAAACGTCCCCCTCTACAGCATCCTGTCTACCATCACTATCCTGGGCATGCTCATGGCAGGAACCTTCCTCTTCTTTAACATCAAAAACCGCAACCACAGGCTGATCAAAATGTCGAGTCCCTATATGAACAACCTGATCATTCTGGGTGGCCTGCTGTCGTACGCCTCCATTTTCCTCTTTGGTCTGGATGGATCTTTTGTGTCAGACAAGGAGTTTGAGACCCTCTGTACTGTCCGTACATGGATCCTCATTGTGGGTTACACAACAGCGTTTGGAGCCATGTTTGCGAAGACCTGGAGAGTGCACGCCATCTTCAAGAATGTAAAGATGAAGAAGAAGATTATCAAGGACCAGAAGCTCTTTATCATCGTGGGTGGGATGTTGCTGATTGATTTGTGCATTCTCATATGCTGGCAGATCGTGGATCCCCTGAAGAGAACTGTGGAAGAGTACAGCTTGGAGGCGAGATTATTTCCACTCATTGGTTTCCTCACTGCGTCTCCACAGGCGGATCCTCAGGGACGAGACATCGCAATCCGGCCCTTCCTGGAGCACTGCGAGAACACGCACATGACCATTTGGCTGGGGATTGTCTATGCCTACAAAGGCCTCCTTATGTTGTTTGGATGTTTTTTGGCCTGGGAGACCAGAAATGTGAGCATTCCAGCCCTGAACGACAGCAAGTACATCGGTATGAGTGTGTATAATGTGGGCATCATGTGTATCATTGGGGCAGCAGTGTCCTTCCTGACCCGAGATCAGCCTAATGTGCAGTTCTGCATCGTGGCACTGGTCATCATCTTCTGCAGCACCATCACGCTGTGTCTGGTGTTTGTGCCAAAGTTTATCACAATGCGAACAAACCCGGATGCTGCCACACAAAACCGGAGGTTAAAGTTCACCCAGAACCAGAAGAAGGAAGATTCCAAGACTTCCACCTCAGTAACCAGTGTTAACCAGGCCAACACTTCCCGTCTGGATGGACTACAGACAGACAACCACCGCCTGCGAATGAGAATTACAGAGCTGGATAAGGAACTGGAAGAGGTTACCATGCAACTCCAGGACACTCCAGAAAAGACTCCGTACATTAAACAAAACCACTACCAAGATGTCAACAATATCCTGAGCATACGCAACTTCACTGACGGCAAAGATGGAGAGAAATCTCTGAAGAACCACTTAGAGCAGAAACCTCAAGCTCAGTGGGGATCCATGGATCCTTCTAGGATAAGCAGAGGTCCACTAGAAGACATCAACTCACCAGAACACATACAGCGCAGGCTGTCCCTGCAGCTGCCGATCCTGCATCACGCCTATCTACCCTCCATAGGAGGGGTGGACGCAAGCTGCAGCAGTCCCACGAGCAGCCCGGCCTCCAGCCCGCACCACAGACACATGCCCCCCTCCTACAGGGTTATGGTGTCCGGCCTG

Function

symbol description
gabbr2 Predicted to enable G protein-coupled GABA receptor activity. Predicted to be involved in gamma-aminobutyric acid signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of G protein-coupled receptor heterodimeric complex. Is expressed in nervous system. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 59 and nicotine dependence. Orthologous to human GABBR2 (gamma-aminobutyric acid type B receptor subunit 2).

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04615 GABBR; gamma-aminobutyric acid type B receptor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_05990266_06191955.mRNA True 2850 mRNA 0.51 19 5990266 6191955

Neighbor

gene id symbol gene type direction distance location
CI01000054_05956278_05957354 FAM206A coding downstream 32912 5956113 ~ 5957354 (-)
CI01000054_05853193_05858118 WISP1A coding downstream 132148 5853075 ~ 5858118 (-)
CI01000054_05827691_05828736 WDYHV1 coding downstream 159549 5827393 ~ 5830717 (-)
CI01000054_05822181_05823458 ZN706, ZNF706, ZFP706 coding downstream 166582 5822146 ~ 5823684 (-)
CI01000054_05711250_05711861 NA coding downstream 277627 5710622 ~ 5712639 (-)
CI01000054_06210877_06211356 NA coding upstream 18852 6210807 ~ 6211475 (-)
CI01000054_06222549_06234979 GALNT12 coding upstream 30512 6222467 ~ 6235072 (-)
CI01000054_06242813_06258348 POC1BL coding upstream 50786 6242741 ~ 6258348 (-)
CI01000054_06283619_06286512 NA coding upstream 91364 6280544 ~ 6286767 (-)
CI01000054_06321499_06337371 NA coding upstream 129314 6321269 ~ 6337767 (-)
G233392 NA non-coding downstream 137559 5760299 ~ 5852707 (-)
G233420 NA non-coding downstream 238988 5750346 ~ 5751278 (-)
G233356 NA non-coding downstream 515874 5474145 ~ 5474392 (-)
G232439 NA non-coding downstream 575724 5414224 ~ 5414542 (-)
G233539 NA non-coding upstream 125366 6317321 ~ 6325541 (-)
G233581 NA non-coding upstream 221128 6413083 ~ 6413708 (-)
G233585 NA non-coding upstream 226650 6418605 ~ 6418858 (-)
G233590 NA non-coding upstream 230826 6422781 ~ 6423081 (-)
G232274 NA other downstream 781026 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 1318033 4670151 ~ 4681361 (-)
G231645 NA other downstream 2007443 3981847 ~ 3982823 (-)
G230908 NA other downstream 2926923 3057648 ~ 3063343 (-)
CI01000054_02857402_02860451 NA other downstream 3129693 2857402 ~ 2860573 (-)
CI01000054_06629482_06641861 TRIQK other upstream 436127 6628082 ~ 6642160 (-)
CI01000054_07165957_07169539 HEYL other upstream 973480 7165435 ~ 7169539 (-)
G235216 NA other upstream 3056084 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 3291192 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 3671366 9863321 ~ 9867212 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014177 gabbr2 coding NC_007130.7 CM002903.2 34311374 ~ 34679738 (+)
bowfin (Amia calva) AMCG00021706 gabbr2,LOC107653854,LOC107724329,LOC107710365,LOC107670291 coding CM030130.1 CM030130.1 26335650 ~ 26371009 (+)