CI01000054_06321499_06337371


Basic Information

Item Value
gene id CI01000054_06321499_06337371
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6321269 ~ 6337767 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_06321499_06337371.mRNA
AGCAGCCCACCCTTAAATCTGAGGCATCATTGATGTCTATCGCACAAACGTTGTGGGATAAGTTACATGCAAAAGTTTATTCCTCAGGGTTAAGGCTTTGTTCAAATCACAAAAGAATTAGTAATTCGCAATAGTGATGCTAGCTGTAGAATACACAAATAGTATATTAATAATTTAGCAAGAAGATTTAGCAGTCATTAGGAACCACAGGAGAAGCTCGTTATCTCTTAACATCTGCAATGCATTTGGACAGTTCCCAGAATAGCCATCCAAAACACAATATCTGTGATTAAGCAATTGTGGAAGTAAAACAAAAGAGGTTTCCAAGTCGGTTTTATGTAAACTTACAAAAGAAAAGGGAAGTGGAAGAACTTGTTTCCCCTAGCATATAAATAAATGGGAGGATGGATCCACCATCATCAAGGCTCTATTCGTGTCTGTCGAGATCATTTTCACATAACAACTTCTGATGCCATTGGCTTTTTCAAATTTGCATGGGTAAGTGAGATAGTTTCTCTATACGTCCACACCGGTGATGCACTCGAAGAAGAGATGTTTGTCACCAAAATAAGACAAAGCCAAAACATCTCGCATATTTTGGTGAAAGCACGCTACATGCCGCATAACATACACTGGACATGCTTACGTTTTAAGACCAAGAGCGCGTGCATGCAATCTGAAGTACCAATGGGGCAAGACGCTGAGCTCACACTTGCCTCGAGACACAAAAGTGACTCAACGACATGAGGATAAAGACTGTCACTGCAACAAAACACATTCTCATCTGGACTCCACAAGACCCGCCCACATGCATCAAAGTCAAGGAAATATATGCATGAAAAAAATGATGAGTTTGAGCTTCTGATAGTTTTTTCAAATGAAAAAGAAGGAATTATTTCTTTCCCAGAGGGCATGGAAGTCTCTACTACTTACAGATGTCATTTCTTCCTCAATTTTTCACAGCTCTTCAGAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_06321499_06337371.mRNA True 977 mRNA 0.39 3 6321269 6337767

Neighbor

gene id symbol gene type direction distance location
CI01000054_06283619_06286512 NA coding downstream 34593 6280544 ~ 6286767 (-)
CI01000054_06242813_06258348 POC1BL coding downstream 62921 6242741 ~ 6258348 (-)
CI01000054_06222549_06234979 GALNT12 coding downstream 86197 6222467 ~ 6235072 (-)
CI01000054_06210877_06211356 NA coding downstream 109794 6210807 ~ 6211475 (-)
CI01000054_05990266_06191955 GABBR2 coding downstream 129314 5990266 ~ 6191955 (-)
CI01000054_06422150_06433402 PEX1 coding upstream 84041 6421808 ~ 6433689 (-)
CI01000054_06469564_06492881 RUNX1T1 coding upstream 131085 6468852 ~ 6492881 (-)
CI01000054_06503408_06508723 NA coding upstream 165466 6503233 ~ 6510068 (-)
CI01000054_06629482_06641861 TRIQK coding upstream 291538 6628082 ~ 6642160 (-)
CI01000054_06830485_06831336 FAM84B coding upstream 491225 6828992 ~ 6831336 (-)
G233392 NA non-coding downstream 468562 5760299 ~ 5852707 (-)
CI01000054_05822181_05823458 ZN706, ZNF706, ZFP706 non-coding downstream 497143 5822146 ~ 5823684 (-)
G233420 NA non-coding downstream 569991 5750346 ~ 5751278 (-)
G233356 NA non-coding downstream 846877 5474145 ~ 5474392 (-)
G233581 NA non-coding upstream 75316 6413083 ~ 6413708 (-)
G233585 NA non-coding upstream 80838 6418605 ~ 6418858 (-)
G233590 NA non-coding upstream 85014 6422781 ~ 6423081 (-)
G233588 NA non-coding upstream 96981 6434748 ~ 6436431 (-)
G233592 NA non-coding upstream 99935 6437702 ~ 6437903 (-)
G232274 NA other downstream 1112029 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 1649036 4670151 ~ 4681361 (-)
G231645 NA other downstream 2338446 3981847 ~ 3982823 (-)
G230908 NA other downstream 3257926 3057648 ~ 3063343 (-)
CI01000054_02857402_02860451 NA other downstream 3460696 2857402 ~ 2860573 (-)
CI01000054_07165957_07169539 HEYL other upstream 827668 7165435 ~ 7169539 (-)
G235216 NA other upstream 2910272 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 3145380 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 3525554 9863321 ~ 9867212 (-)

Expression


Co-expression Network