CI01000054_06422150_06433402 (PEX1)


Basic Information

Item Value
gene id CI01000054_06422150_06433402
gene name PEX1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6421808 ~ 6433689 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_06422150_06433402.mRNA
TGGGGGATAATTTCAAGAATAATTTGTGATGTGATTAGTCGCTTTTGGGACTTGTTTAGTCAGTCTATGTTGCTTGTTTTTCTAGTGAAATTCGGCAACACTGCGAGACGCAGCTAATCGAAAATGTTCGTTTTAACAGCGTCTGCGACTGATCGATACACTCGGCTTATAATGTCTGACGTGCAATTCATGTTGACAGTTCTAGCATGCTGAATTTAACTCCACAAATTAGCTTCAATAAGGGATAATTTTGTAGTAGGAGCGAGACTTCTGCAGCCTTGCAGGCAATGTTGGGAAGCCAAGGGATTCAACCTGTCACTCTGGTCTTCAATAACTCCAAGAACTGCTTTCTTCAGCTGTCATCAAACTTCGCCACTCATCTCTGTCTTCATGAGAACCAGATCCTGGAGCTGTCATGGGGTGTTTCTGCACCCGTGTTCCTCAGCTGGACCAGGTCCAGGTCTTCAGGTCCAGAGGACAGAGTTGAGATCAGCAGACAGCTGGGAGAGAAACTTGGGCTCAAAGAGGGAGAACAGGGGTATCTGCGGCCATGTCATCAGGTGCAGTCAGTGCAGCAGGTGTTCGTAGAGCCTCTGTCTCCAGATGACTGGGAGATCCTGGAGCTGCACAGCATTGCTCTGGAGCAGCAACTCCTGGATCAGATCCGAGTGGTCTTCAGTGACGGTGTGTTCCCTGTATGGGTGGACCAGCACACTGTCATCTATATCAGGATAGCATCCCTATCTCCATCTGTTCCTTACGGCCGACTGGAGCAGTTCACTGAGCTCATTGTCTCCCCAAAACTACATCCAGGAAATGAACAACTCCACCAAACTCGATCAGTGGAGCCAAGCCAACATCTGCAACACCAGAACATTGATGTCACATCTTCCTCCAGCTCAATCATCCATCGGGAAACCCTCGGTGATCATCTGGAGAGTCCGAATGAAGGCCATTGGGGAGGTATAGCTGATCTGAAAAGCTTGGTTAGATACCTGTTTACAAGAGGATTTGAGCCTTCAAAGGAGAATCTCGCAGTTCCCACAATTCCCACCATCCTGAAAGACTGTATCCTCAGAACATGTGGAACCCCTCCTAGCTCTGTCAGCCATTTAGGCTCATGTCATGGAGATGTCCATATACTGCCATGGAACCTGCAAGAACAAGAGAACTGGAATCCAGGGCAGTCTGCCTTAACATACGGTAGACTTTCAAAGATCCTTTCTCCTAAAGAACTCAGGGAGAAAGTCAAGCAGGCCATGGAGAAGAAGAAAATCAGAGATGGACCTCACAAAGGGAACGACGCAGAGGAATGTAAGGAGAACGCTGTTGTGGTCAGGATGCTTTGTCACAATATTAAAAGGCTGCAGGAAGACCAGAAATTCAGTAAATGTGAAGAAATTTACTCTGGGAATGTTTGGATCCCAAAGGTGCTGCAGAGGCGTTTGAGGATAGAGCCTCATTCGGCTGTAAGGATTCAGCCTTTGAAATCATTGCCAAGAGTAGCAGAAGCAGTCATGGTTCGAACATTGCAACCGTTGGCAGAAAGTGAAAAAGAAGAAGATATTCAAACTGCATTCCTCAACTGGCTGCATGCTCAGAGCCATCAACCTTTGACCTGTCTGACAGGACGCTCTAATGTCATTCTCTTACCCTGTGCTGAAGGAAAAGAAGAGTTTGTCTTGACCGTGCTAAAACCAGAGCAACAGCAAGAGGATGAGATGTTCTTTCTATCATCCAGTTTACTAAAGAAAACAGACGTGCAGATTGTCAGAGAGCCTCAAGATTCTGACCACAGTGGCTCTGATGATGATAATGAAGATCTGTTTCTTGGCTTTCCTTCCCTCAGCTCTCTTGGTGGGGTAGAGGACATCAGCAGGTCTGCTTTCGAGCACATCTCTCACGCTCTAATGGGAGGTCCTCTGTCGCGTGAGCTGGTCTCCACAGGACGTGGACTGAGGGGTGGAGCTCTGCTCATCACAGGTGCAAAGGGCAGTGGAAAATCTTCTCTATCTAGAGCGCTGTGTCGAAAAGCCAGTGAAGAGCTGGATGCCCACATTCAAGTTGTGGACTGCAAGGCACTGAAAGGCAAGAGAGCAGACACAATCAGACAGAGGTTGGAAGAGGTTTTCGAGCAGGCAGTTTGGAGACAACCCTCAGTGGTCCTGCTGGATGACTTGGATCACGTGACCGGTGCTGCGACCTCACCTGAGCATGAGCATGGGCCAGAGGCCGTACTGCGGCAGCACATAGCACAGATTCTGAGGGATTTGGTGGATGAGATGGTGGTGCGCTCCAGCCTCATAGCTCTGATGGTCACAGCACAGAGTGAGCATTCCCTTCATCAGACTCTGACTGCGGTGCAGGGTTCACACTTCTTCCAAAGCTTCTGCAAGATCCAAACACCAGATCAGCTGCAGACTCCCACTGGGGCCGGCATGGAGCGTATTGGGGGACTTCATCAGGCACGTCAGCTCCTGATGGACATCATACTGCTGCCAGCTAAGTACCCGCTGCTCTTCTCCAGTCTGCCCTTGCGTCAGTGCTCCGGTGTGCTGCTCTATGGAGCTCCTGGAACAGGCAAGACTTTACTGGCTGGAGCTGTGGCCAAAGAGAGCGGCATGAACTTCATCAGCATCAAGGGTCCCGAACTCCTCAGCAAGTATATTGGTGCCAGTGAGCAGGCAGTTAGAGATGTGTTTCAGAGGGCTCAACAAGCTAAGCCGTGCATACTGTTCTTTGATGAGTTTGACTCTCTGGCCCCTCGAAGAGGACATGACAACACAGGGGTCACTGACCGTGTGGTTAATCAGCTACTTACTCAGCTGGATGGAGTGGAAGGACTGACAGGGGTGTATGTGTTGGCTGCCACCAGTCGTCCTGACCTGATTGATCCTGCTCTCTTGAGACCTGGGAGACTGGACAAGTCTCTCTACTGCCCTCCTCCTGATCGGGAGGCACGGCTGGAGATCCTTAGGGCTTTGACTCATTCTGTGCCACTGGCTGCAGATGTGGACTTGGAGCAGATTGCTGTGGCAACAGAGCTGTTCACTGGAGCCGACCTGAAGGCCCTTCTCTATAACGCTCAGCTAGAAGCGATCCATAGCAGCCTGGGGTCCAACCTTCTGCATGATTTGGGCTCAGGGTCAGACAGTGATGTCAGCCTCTCCTCCCTGATCTTCCTGAACCATAGCAGCGGGTCAGATGACTCGGCTGGGGAGGGGGACGCAGGGCTGGAGCACTCTATGGTTCTGCTGGACCCCAGTGAACTTCCACCTGAGGACCCACGTCACAACATCTGGCGCCTTTACTTCGGTAGCTCCTTTGAGTCTGAACTGGATAACCAGTCTCTGTCTGAATTGAATTCTCAGTGCCTGTCTGGACCCAATTCTACTGCCCCCGACCTGACAGGGGCATCAATGAGGGATCCAAGCTCCTGTCATGCCCCCGTTTTTATGTCCTGTCTGCAAGAAGGCTTTCAGGAACTGACCCATGAGCAGTCCGAACGCCTCCGAGCAGAAGTCAGCACTGTTAAGAATAGTTACCGCAAAAACACGGATGAATCATCTCTGGTGCAAGCTGGCCCCAGTAAGCCTGGCTCTCTCATATGCCAAACTCACCTGACCACTGCTTTGGCTAACACTAGAGCATCTGTCAGCAGAGAAGACTGGAGGAGATACACTGAACTATATGAGTCTTTCGGAGCCTCAAACGAAGGCAAGAGAACTGCTTCGTTTAAAGCAGGTCAGCGTGTGACCTTGGCGTAATGAGAGTCTTGGATAAATTAATACAGCTCAGGGCATTAGAAGGCAAATTTTTTTGCTGAGATTTTGGTGTGTGTTACTGTCAACTGGTATCACACATTCTGGGCTTTTCTACTTTTCGCCTCAAGAGCAAATGTATACTTACAATGTTTTCTTGCTAAGTAGAGGGATGTATCAAGAATTTGACTTAAATTCAGTAGCACTGAACAAAGAATTTAAAGATAATTTTGAAGTTTATCAAGTGACATGTTTGCTAAATTTGCTTAGCTGCTTTTGCAATATAATCTAAAGAAAACAAATGTGTATATATGCATTAAATATGTAATTAATTAACTTTTTAATAAA

Function

symbol description
pex1 Predicted to enable ATP hydrolysis activity. Predicted to be involved in protein import into peroxisome matrix. Predicted to act upstream of or within protein targeting to peroxisome. Predicted to be located in peroxisome. Predicted to be active in cytosol and peroxisomal membrane. Human ortholog(s) of this gene implicated in Heimler syndrome 1; infantile Refsum disease; and peroxisome biogenesis disorder 1A. Orthologous to human PEX1 (peroxisomal biogenesis factor 1).

GO:

id name namespace
GO:0007031 peroxisome organization biological_process

KEGG:

id description
K13338 PEX1; peroxin-1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_06422150_06433402.mRNA True 4109 mRNA 0.49 23 6421808 6433689

Neighbor

gene id symbol gene type direction distance location
CI01000054_06321499_06337371 NA coding downstream 84041 6321269 ~ 6337767 (-)
CI01000054_06283619_06286512 NA coding downstream 135132 6280544 ~ 6286767 (-)
CI01000054_06242813_06258348 POC1BL coding downstream 163460 6242741 ~ 6258348 (-)
CI01000054_06222549_06234979 GALNT12 coding downstream 186736 6222467 ~ 6235072 (-)
CI01000054_06210877_06211356 NA coding downstream 210333 6210807 ~ 6211475 (-)
CI01000054_06469564_06492881 RUNX1T1 coding upstream 35163 6468852 ~ 6492881 (-)
CI01000054_06503408_06508723 NA coding upstream 69544 6503233 ~ 6510068 (-)
CI01000054_06629482_06641861 TRIQK coding upstream 195616 6628082 ~ 6642160 (-)
CI01000054_06830485_06831336 FAM84B coding upstream 395303 6828992 ~ 6831336 (-)
CI01000054_06835747_06861855 FAM91A1 coding upstream 400731 6834420 ~ 6863079 (-)
G233585 NA non-coding downstream 2950 6418605 ~ 6418858 (-)
G233581 NA non-coding downstream 8100 6413083 ~ 6413708 (-)
G233539 NA non-coding downstream 96267 6317321 ~ 6325541 (-)
G233392 NA non-coding downstream 569101 5760299 ~ 5852707 (-)
G233588 NA non-coding upstream 1059 6434748 ~ 6436431 (-)
G233592 NA non-coding upstream 4013 6437702 ~ 6437903 (-)
G233593 NA non-coding upstream 4905 6438594 ~ 6438880 (-)
G233594 NA non-coding upstream 7416 6441105 ~ 6441497 (-)
G233595 NA non-coding upstream 7965 6441654 ~ 6441865 (-)
G232274 NA other downstream 1212568 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 1749575 4670151 ~ 4681361 (-)
G231645 NA other downstream 2438985 3981847 ~ 3982823 (-)
G230908 NA other downstream 3358465 3057648 ~ 3063343 (-)
CI01000054_02857402_02860451 NA other downstream 3561235 2857402 ~ 2860573 (-)
CI01000054_07165957_07169539 HEYL other upstream 731746 7165435 ~ 7169539 (-)
G235216 NA other upstream 2814350 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 3049458 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 3429632 9863321 ~ 9867212 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014170 pex1 coding NC_007130.7 CM002903.2 33850705 ~ 33876245 (+)