Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000054_06434217_06435680 |
| gene name | OTUD6B |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 6433756 ~ 6435680 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| otud6b | Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within proteolysis. Orthologous to several human genes including OTUD6B (OTU deubiquitinase 6B). |
| id | name | namespace |
|---|---|---|
| GO:0016787 | hydrolase activity | molecular_function |
| id | description |
|---|---|
| K18342 | OTUD6; OTU domain-containing protein 6 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000054_06434217_06435680.mRNA | True | 1151 | mRNA | 0.41 | 5 | 6433756 | 6435680 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000054_06411594_06411984 | NA | coding | upstream | 21235 | 6411594 ~ 6412521 (+) |
| CI01000054_06305908_06312122 | NA | coding | upstream | 121593 | 6305908 ~ 6312163 (+) |
| CI01000054_06292147_06297237 | NA | coding | upstream | 136196 | 6291976 ~ 6297560 (+) |
| CI01000054_05989042_05989389 | NA | coding | upstream | 443961 | 5989042 ~ 5989795 (+) |
| CI01000054_05957906_05981499 | ELP2 | coding | upstream | 451534 | 5957399 ~ 5982222 (+) |
| CI01000054_06437628_06441214 | NA | coding | downstream | 1948 | 6437628 ~ 6441481 (+) |
| CI01000054_06756071_06757443 | NA | coding | downstream | 320129 | 6755809 ~ 6757514 (+) |
| CI01000054_06759472_06761310 | NA | coding | downstream | 323131 | 6758811 ~ 6761310 (+) |
| CI01000054_06789505_06789810 | NA | coding | downstream | 352682 | 6788362 ~ 6789946 (+) |
| CI01000054_06795526_06796596 | TRIB1 | coding | downstream | 359846 | 6795526 ~ 6796644 (+) |
| G232674 | NA | non-coding | upstream | 4324 | 6429131 ~ 6429432 (+) |
| G232664 | NA | non-coding | upstream | 17545 | 6415663 ~ 6416211 (+) |
| G232501 | NA | non-coding | upstream | 87123 | 5918059 ~ 6346633 (+) |
| G232648 | NA | non-coding | upstream | 146677 | 6286265 ~ 6287079 (+) |
| G232606 | NA | non-coding | upstream | 297727 | 6134517 ~ 6136029 (+) |
| G232684 | NA | non-coding | downstream | 16178 | 6451858 ~ 6452068 (+) |
| G232689 | NA | non-coding | downstream | 24201 | 6459881 ~ 6460125 (+) |
| G232691 | NA | non-coding | downstream | 27347 | 6463027 ~ 6463256 (+) |
| G232719 | NA | non-coding | downstream | 97341 | 6533021 ~ 6533230 (+) |
| G232721 | NA | non-coding | downstream | 102299 | 6537979 ~ 6538207 (+) |
| G232659 | NA | other | upstream | 57862 | 6374850 ~ 6375894 (+) |
| G232558 | NA | other | upstream | 391893 | 5993660 ~ 6041863 (+) |
| CI01000054_05608892_05634793 | RNF19B | other | upstream | 809081 | 5608457 ~ 5634804 (+) |
| G231863 | NA | other | upstream | 1983026 | 4407152 ~ 4450730 (+) |
| G232870 | NA | other | downstream | 452232 | 6887912 ~ 6888503 (+) |
| G233024 | NA | other | downstream | 1131843 | 7567523 ~ 7609893 (+) |
| G233306 | NA | other | downstream | 1868919 | 8304599 ~ 8304949 (+) |
| CI01000054_08325126_08329621 | HPCAL4, VSNL1, VSNL1.S | other | downstream | 1870257 | 8325126 ~ 8329716 (+) |
| G235560 | NA | other | downstream | 3952456 | 10388136 ~ 10392378 (+) |
