CI01000054_06437628_06441214


Basic Information

Item Value
gene id CI01000054_06437628_06441214
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6437628 ~ 6441481 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_06437628_06441214.mRNA
ATGACAGCATGTTATACTCATGTTAGTCCGTCAGGCGGCGCCAGTGGCCTCAGTCAAGTTGCGGTGCATCTCCATGGAAACGTAGGGAATGTTCAAGAAGTTTTTGAGAGGCTTACATGGATTGTTGTATTAAAGTTGAATAACAATAATCTGTCGAGTCTGCCATCTGAACTGGTGTGTTTACAGAAGGGTGCTCTTGGTTGGAAAAATCTGAAGATCTTAGATGTTGCCGGAAATCGTTTATCAGTGTTTCCAGTTGGTTTTCAGTTTCTCACATTGGAGGAACTGTTTTTTGAAGGAAACAGTTTAGTTCAATTCACACTGATGGAGTCCATTCAAGAGAAAGAAGTCCTCTCATTAAAAGAACTCTCAGCGAGACTCATCCTCCAGGAGAGCACAAACAGGTTCTCAGTGGTGTCCAGAGCTCTGCCAATGTACCCAGAGCTGCAGGACATGCTGTCTCAGTGGGGCCAGTGTGTCCTGTGCTCACAACCCTTCCTCACCACCTGGCTGGAGTGTGTGCAGTTCATCAACACCAAGAAGCACATGGGGATGAAAAGCTCACAGTCTATTCCAGTGAGAGTTTTGCTGTGCTCTTACAACTGCTTCAACAGAGATGACCACCAATACTATGGGCTTGTACGATTGTAAATTAAAAATGTCTTTTTATTTTACCCCATGACTGATCATGATCTAAATATCTGTTTATTATATAGAATGAATATTTGATGTTTTCGCAATACACCAGCAGATGGCAACATTTGATCACTGACATTCTGTGATCTGACTGTCAGATCTGTTGAGGCGAATCATTCCAGTCAATTTCTTTTGTAAATATCTCACAATAATGCACATAGATATCCTTCTATACTAGATTAACATGCCATGCACTTCTTTTTCCTTAACCCTCACATTTTA

Function

NR:

description
hypothetical protein cypCar_00005172

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_06437628_06441214.mRNA True 918 mRNA 0.42 6 6437628 6441481

Neighbor

gene id symbol gene type direction distance location
CI01000054_06434217_06435680 OTUD6B coding upstream 1948 6433756 ~ 6435680 (+)
CI01000054_06411594_06411984 NA coding upstream 25107 6411594 ~ 6412521 (+)
CI01000054_06305908_06312122 NA coding upstream 125465 6305908 ~ 6312163 (+)
CI01000054_06292147_06297237 NA coding upstream 140068 6291976 ~ 6297560 (+)
CI01000054_05989042_05989389 NA coding upstream 447833 5989042 ~ 5989795 (+)
CI01000054_06756071_06757443 NA coding downstream 314328 6755809 ~ 6757514 (+)
CI01000054_06759472_06761310 NA coding downstream 317330 6758811 ~ 6761310 (+)
CI01000054_06789505_06789810 NA coding downstream 346881 6788362 ~ 6789946 (+)
CI01000054_06795526_06796596 TRIB1 coding downstream 354045 6795526 ~ 6796644 (+)
CI01000054_06865381_06869404 KLHL38A, KLHL38 coding downstream 423900 6865381 ~ 6869942 (+)
G232674 NA non-coding upstream 8196 6429131 ~ 6429432 (+)
G232664 NA non-coding upstream 21417 6415663 ~ 6416211 (+)
G232501 NA non-coding upstream 90995 5918059 ~ 6346633 (+)
G232684 NA non-coding downstream 10377 6451858 ~ 6452068 (+)
G232689 NA non-coding downstream 18400 6459881 ~ 6460125 (+)
G232691 NA non-coding downstream 21546 6463027 ~ 6463256 (+)
G232719 NA non-coding downstream 91540 6533021 ~ 6533230 (+)
G232721 NA non-coding downstream 96498 6537979 ~ 6538207 (+)
G232659 NA other upstream 61734 6374850 ~ 6375894 (+)
G232558 NA other upstream 395765 5993660 ~ 6041863 (+)
CI01000054_05608892_05634793 RNF19B other upstream 812953 5608457 ~ 5634804 (+)
G231863 NA other upstream 1986898 4407152 ~ 4450730 (+)
G232870 NA other downstream 446431 6887912 ~ 6888503 (+)
G233024 NA other downstream 1126042 7567523 ~ 7609893 (+)
G233306 NA other downstream 1863118 8304599 ~ 8304949 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other downstream 1864456 8325126 ~ 8329716 (+)
G235560 NA other downstream 3946655 10388136 ~ 10392378 (+)

Expression


Co-expression Network