CI01000054_06503408_06508723


Basic Information

Item Value
gene id CI01000054_06503408_06508723
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6503233 ~ 6510068 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_06503408_06508723.mRNA
AATAAGAAAAAACATACTGTATATATTATAAATACTGTAAATTGCTGATATATTTTTTTCTGTCACTAAATTATTTGGGAACGAGAGTGTACACAACACAGTAAATATATGTTGTGTATAATTATATAGTGCTTTATATTTGTCAGGTAAGTCTAACAGTATTCAGGTACATAAATTGAATAATCAAATGTAAAATAACACTGCATAGTCTTCACTGTATAAATTAAATATAATTATTCTGTGTTAAAACTACAAAAGTGATTTTTCTCTTTGTGTTTTGTTGTTTGATTAACATTCATGACACAGAAAGTAGCAGGGGCTTCTGTCACTTTAAGACCGAATGCGCAGATCCAAAATAATGTTACACATCCGGTTTTCTTTCTCACTTGTTTAGTTCACCTAAGCCATAAGCAACTGTTTACGAGGATACTCAATGTTTTACGTGCATTGGATTACGTCCATTTAAGCATAAATAGACACGGAAGAGCATGGCATTCAGTGTTCACATGCATCTGTGCAGCTCTGTGTGTGTGTGCACAGAGAACAGCCGTACGTTCAGAATTGAGCTCTATTTTGCATTTTCATGAGCTCAAATGGTTTAAAGTCACTTAAATATTTAAACTGACAGGACCTAAAGCACGTTCAAATGATAAACTTTCATTGTATGATGGTCAAACTTTGCAGTTTATCTGAGAATCACATGGATTTTAAACCGTGGTGTCTGGTCCGTACGGATTAATGTTCCCTATACTTGACATCGCACATTGTGATATCAATGCTAAAACGATATATCGTGCAGCCCTAATATAAAGTGAGAAAAACTCTTTCCCTTTTTTCCCCTCTTTTAACAAAACTTATTATTTGCATTTCTTTATTCAGGTGGTGAGGCTCTTATGTCCCTGGCTTTTCTTGGCTGATAGAGGAATGTAAACCCTGAATTGAGTGAAGAAGTTGTTTAGCCCCCTCTCTCCTTCAATGCCTCTCCTCTCCCGTCTCAGGCTTCATGCCATCTGTGGGTTTGATTTAGTGGCTAAGAGGCTTTCTGAGCAATGGACAAGTGATGTTAATAGCACACATATGCCAGAGGACTGTTTTAGTTTTACGGCTCTGACATGAGACGGTTTTTATTCAAGCGAGGCCGAGCATAACTCATCCACTGCTGCGCTGGTCGCCATATATTTTAATAACAGCAATGAGTTTCTCTTTTTATGTCCTCTGTATCTGTTTCTTTTTTTCTCTTTCTAGTAGTGGTGGTGACTTTATTTAGCATGTACTACACACACAAAAGCACCTCTGCAGGTTGACAGGCTGCTCACCTCACAACATATCTGCAGTGCCCGTTGTCATGGCAACTGCAGCAGCGGGCTTCTGGCGGTACTTTGTGGTCAGAGCTGGGGCTAGTGAATATTTCATGAGGATGCTGGGAGTGTTTAATCCTAATCTCCAGGGCTTGCGGAAGCCTGATAGCGGGACCAACCTCTCGACCAGGACAGTGGAGACAAAAGGTATTAATCTCCATTGCCCAATGAAACATGCTCTGTTTTCTGCAATGAGAAAGAGTGGCTCAGCTGTCAGACGGTGCCTGGACTGGGCTGAGAGTCTGGCTCAGAGTGAGCCGCACATACAGATGATACTTGCACACATTATAAAGACTGGAAAGCAGGATCATTCTGCCGTCACTGGGGCGTCAGCGTACCACAAAAGACACGTTTCCCCCTGTGTAACCTGGCCTGCAGCACAGTGCAGGGCATCCCTGGAAGCAGAGCAGAACGAGAGGCAGGTCTCCATCTGTCCCTCTAAGGCTCTGAAAGCAGGAGGACAAGCTGCTCGACTCTCCCGTTTGGACCTGGTGTACCGGCCCTGGGGTCCTGTGCCACCCCCGTACCCCTCGCAGAGCACAGAAAGACGCAAAGAGACTTTGGTTACAGGGAAGCTGGTAGAAATACCCTGGATTATTTGATAAGATCATCTTCATCATCTATGATGCCAGGTGAGATTGGGAAGCTTTGATTGTGTGTGGGAAATTGTGCATGTGCGTTTTGAATGTAAATATTTTGTAAAATTTAGAATTAGACTATTTAAGGCAGCTTTTACTGATGTTTTTACATTTGTTGACTGCTCTTGGAAGAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_06503408_06508723.mRNA True 2135 mRNA 0.42 7 6503233 6510068

Neighbor

gene id symbol gene type direction distance location
CI01000054_06469564_06492881 RUNX1T1 coding downstream 10352 6468852 ~ 6492881 (-)
CI01000054_06422150_06433402 PEX1 coding downstream 69544 6421808 ~ 6433689 (-)
CI01000054_06321499_06337371 NA coding downstream 165466 6321269 ~ 6337767 (-)
CI01000054_06283619_06286512 NA coding downstream 216557 6280544 ~ 6286767 (-)
CI01000054_06242813_06258348 POC1BL coding downstream 244885 6242741 ~ 6258348 (-)
CI01000054_06629482_06641861 TRIQK coding upstream 119237 6628082 ~ 6642160 (-)
CI01000054_06830485_06831336 FAM84B coding upstream 318924 6828992 ~ 6831336 (-)
CI01000054_06835747_06861855 FAM91A1 coding upstream 324352 6834420 ~ 6863079 (-)
CI01000054_06874039_06875193 NA coding upstream 363252 6873320 ~ 6875309 (-)
CI01000054_06895032_06942103 SPIRE1A coding upstream 384760 6894828 ~ 6942362 (-)
G233608 NA non-coding downstream 44837 6458178 ~ 6458396 (-)
G233601 NA non-coding downstream 52333 6450682 ~ 6450900 (-)
G233595 NA non-coding downstream 61368 6441654 ~ 6441865 (-)
G233594 NA non-coding downstream 61736 6441105 ~ 6441497 (-)
G233593 NA non-coding downstream 64353 6438594 ~ 6438880 (-)
G233577 NA non-coding upstream 3422 6513490 ~ 6523980 (-)
G233677 NA non-coding upstream 97764 6607832 ~ 6608083 (-)
G233678 NA non-coding upstream 98440 6608508 ~ 6608864 (-)
G233685 NA non-coding upstream 109606 6619674 ~ 6619899 (-)
G233689 NA non-coding upstream 114753 6624821 ~ 6625104 (-)
G232274 NA other downstream 1293993 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 1831000 4670151 ~ 4681361 (-)
G231645 NA other downstream 2520410 3981847 ~ 3982823 (-)
G230908 NA other downstream 3439890 3057648 ~ 3063343 (-)
CI01000054_02857402_02860451 NA other downstream 3642660 2857402 ~ 2860573 (-)
CI01000054_07165957_07169539 HEYL other upstream 655367 7165435 ~ 7169539 (-)
G235216 NA other upstream 2737971 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 2973079 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 3353253 9863321 ~ 9867212 (-)

Expression


Co-expression Network