CI01000054_06795526_06796596 (TRIB1)


Basic Information

Item Value
gene id CI01000054_06795526_06796596
gene name TRIB1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6795526 ~ 6796644 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_06795526_06796596.mRNA
GAGCCATTTGAAATTAGAGGGTCTGGAGGACTGCCATATTCTGTGCGGAGAGGACGACTTGATGTTCGACACGCACGGCTGCCCTGCGTATGTGAGTCCGGAGATTTTAAATGGCGGAGGGTGTTACTCAGGCAAGCAGGCGGATGCGTGGAGCCTCGGCGTCATGCTGTACACAATTTTGGTGGGCCGCTACCCTTTCCATGACCCGGACCCCGCAACCCTATTCTCTAAGATTCGACGGGGCACATATTGCCTTCCCGATGGGCTGTCTTTAAGGGCGCGCTGCCTACTTCGCAGTCTGCTCAGAAAGGACCCCAGCGAGAGACTGACCACCGCAGAGGTCCTCATTCACCCATGGTTCAATGGCAACACGCTGGACACAGGAAATGCAGAACAGGAAGTCAACCTCAGAGAACAGACAGTGCCCCAGATAGAAATGGAGCAGGGTGGTACTTTTCTTATTTGCGATAGCCTAACCTATACATCTCTCAGAAATGCCAAACTGTACAGAAGGGTCGTTCAAACGTTAAATGTCAGTTATTGACCCTTAATACTCTGTGTCATACAGATTCTTAAATTCAGTGAATTTCCA

Function

symbol description
trib1 Predicted to enable mitogen-activated protein kinase kinase binding activity. Acts upstream of or within liver development. Predicted to be active in nucleus. Orthologous to human TRIB1 (tribbles pseudokinase 1).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K08814 TRIB1_2; tribbles homolog 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_06795526_06796596.mRNA True 592 mRNA 0.51 2 6795526 6796644

Neighbor

gene id symbol gene type direction distance location
CI01000054_06789505_06789810 NA coding upstream 5580 6788362 ~ 6789946 (+)
CI01000054_06759472_06761310 NA coding upstream 34216 6758811 ~ 6761310 (+)
CI01000054_06756071_06757443 NA coding upstream 38012 6755809 ~ 6757514 (+)
CI01000054_06437628_06441214 NA coding upstream 354045 6437628 ~ 6441481 (+)
CI01000054_06434217_06435680 OTUD6B coding upstream 359846 6433756 ~ 6435680 (+)
CI01000054_06865381_06869404 KLHL38A, KLHL38 coding downstream 68737 6865381 ~ 6869942 (+)
CI01000054_06962442_06966056 AZIN1B coding downstream 165689 6962333 ~ 6966238 (+)
CI01000054_06967494_06972758 RRM2B coding downstream 170370 6967014 ~ 6972876 (+)
CI01000054_06974533_06985526 MTDHA coding downstream 176708 6973352 ~ 6987037 (+)
CI01000054_06990478_06999311 LAPTM4B coding downstream 193761 6990405 ~ 6999311 (+)
G232805 NA non-coding upstream 60154 6735063 ~ 6735372 (+)
G232800 NA non-coding upstream 70378 6724842 ~ 6725148 (+)
G232794 NA non-coding upstream 86556 6708625 ~ 6708970 (+)
G232792 NA non-coding upstream 108745 6686206 ~ 6686781 (+)
G232788 NA non-coding upstream 116350 6678938 ~ 6679176 (+)
G232842 NA non-coding downstream 42981 6839625 ~ 6841063 (+)
G232871 NA non-coding downstream 93277 6889921 ~ 6890149 (+)
G232876 NA non-coding downstream 119302 6915946 ~ 6917280 (+)
G232882 NA non-coding downstream 147912 6944556 ~ 6945596 (+)
G232883 NA non-coding downstream 148986 6945630 ~ 6945833 (+)
G232659 NA other upstream 419632 6374850 ~ 6375894 (+)
CI01000054_06305908_06312122 NA other upstream 488666 6305908 ~ 6312163 (+)
G232558 NA other upstream 753663 5993660 ~ 6041863 (+)
CI01000054_05608892_05634793 RNF19B other upstream 1170851 5608457 ~ 5634804 (+)
G231863 NA other upstream 2344796 4407152 ~ 4450730 (+)
G232870 NA other downstream 91268 6887912 ~ 6888503 (+)
G233024 NA other downstream 770879 7567523 ~ 7609893 (+)
G233306 NA other downstream 1507955 8304599 ~ 8304949 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other downstream 1509293 8325126 ~ 8329716 (+)
G235560 NA other downstream 3591492 10388136 ~ 10392378 (+)

Expression


Co-expression Network