CI01000054_06895032_06942103 (SPIRE1A)


Basic Information

Item Value
gene id CI01000054_06895032_06942103
gene name SPIRE1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6894828 ~ 6942362 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_06895032_06942103.mRNA
AGTCTTCTCATAGTTTGTATTGTCAATGAAGTGACCAAGGACATGACTGACTCTGAGACCATGCGGAAAAGTCATATGAACGCCTCTCAGAGTCGAACAGCAGCAGCAGCAGCTCGAGCTCAGAAGTAGCGACACAGGCAGCAGAGGCGGACACGCGCGATCCTTCTAGATGACAGACCTAACGTAAACATACCTTTTCTGTCTCTTTATCACCCTAACACACAGTCATTTTTGCTCTCTGGAAACCTGGAGAAGAAGAATGACTGACGAAGGAATGTTAATCTCACCGTCGGCTCTCCAGGATCCCGGAGATGGAGCGAAAACTGAAGACATCAGTATGGATTGTACGGACGGGGAAGATGAATTGTGTTTGGAGGAGATTTTAACACTGTACAGTCAACCGATCAATGAGGAGCAAGCCTGGGCCGTGTGTTATCAGTGCTGCAGGTGGTTAACTCAAAAACAGAGACGGAAAGAGACAGGTGTGAGTCCACCTGGTCGGATTGCGGGTCCTGGAGATGTGAGGATCCGGAAGGACGGGACTGTTAAATTATATCAACAGAGCAGTCCAGATAAACACATACCACCCAGTTCATCAATAGAGGAGGTGCACAGACAAAGAGGATTAGACCCAAGATCCAGTTCAGTGGCTAAAGTGGGATTATCGGACCTCTTAATGAGAGTTTCTTCAAGCTACAGGTCATACTACCTGTCTGTGTTTCTGGTCTCGAGGGAGAGGCCGCTGTTAGATAGGCTTTGGATGAGGAGTAGGAATGTCGATGGACGTCTGCAGGAACTCGATGTTCTCACAGTCACACCCTCCACCGCTTCTGAGTTACATGCATTCCCACGCAGGCTAGACTTGCTGGTGGCTTCTCAGATCATAGAGTCTCTGGGTATAATGATCTACAAGGCTTTGGATTACGGCCTGAAGGAGCATGAGGAGAGAGAACTCAGCCCTCCTCTGGAGCAGCTCATCGACCTCATGACCAACATGGCAGACACAGAAACAGACTGTCCTGATGAGGGATATGAGGCAACAGAAGAAGAGGATGAGGGAGAGGAAGAACCTGCAGAAGTCTCCAACATTCGTGGCTACCGTGACATTATTTCTCTCTGCACGTCTCACCTCCCCAGCCCATCGGATGCTCCCAACCACTACCAAGCCGTATGTCGAGCCCTGTACGCAGAGACCAAGGAGCTACGCACCTTCTTGGAGAAGATCAAGTGTGCCAAAGAGAATTTACGAAAGATGGAAGGAGAAACAGAGCAGCCCGTCAAAGACCTGAATGAGCTGCAAAATGCTGACTGGGCACGGTTTTGGGTGCAGGTGATGAGGGACCTGAGACATGGTGTGAAGCTGAAGAAGGTCCAGGAGCGTCAATATAATCCTCTACCCATCGAGTTCCAGCTCACGCCTTATGAGATGCTCATGGACGACATCCGCTCCAAACGCTACAAACTTCGCAAGGTCATGGTCAATGGTAACATTCCTCCGAGGTTAAAGAAGAGTGCCCACGAGATCATACTGGAGTTCATTCGATCCAGACCTCCACTGAATCCTGTTTCTGCTCGTAAGCTAAAGCCTCACACTCCAACACCTCCAAGCCTTCATGAACGTATCCTGGAAGAGATCCGGTCGGAGAGAAAGCTGAGGCCTGTCTCACCTGATATGATCCGTAGGAGTCGACTCGTAATACGCCCACTTAGCATGTCTGTCAGTTTTGACTCATCAGCGCACAGTTCTTTCCACCTCCATATCCCACTAATCCTCTGTCATGTATGGCTGCTGCTTCTGTGTGGCTACACTGTGTTTGTGCTTCGTTGTGCTGATGTTACAGTCACAAGCGCAGGCAAAAGTATGAGCACCCCACAGGACTTGTTCCGAAGCTCAGACATCCCTGACGGACCCCGAAAGTTGGCCGTCAGCACACTGTCCCTGGCCAATGGCACATCGCCAGCTCGGAGCCCCGTTAACGGAGTAGCCGGAGGTCAGCCGCTGTCCCAGAGGAAGAGGTTACTCAAAGCACCTACGCTAGCCGAGCTTGACAGCTCAGACTCTGATGAGGACCAAAACACTCAGAAATCTGATAGCAGCTCCAGCATATCGACCTCACTGGTTGAAGACACATCTCCAGAGTCCATCATGGGCAAAAAGATTCCCCCACAGTTCCTGCCTATATCTTCCACTCCTCAACCTGACAAACGTATCGCTCCGCAGAGAAGGCACTCCATAGAGAAAGAAGCTCCCACCAACGTACGGTCTTTCCTGCCTCCATCTCGCCAGAACTCCAAATCTCTGGAGGAGTTCTGCTACCCTGTCGAGTGCCTGACTTTGACCGTCGAGGAGGTGATGCATATCAGACAGGTTCTCGTTAAAGCAGAGCTGGAGAAGTTTCAGCAGTATAAAGAGGTTTATAATGCGCTGAAGAAAGGAAAGCTTTGCTTCTCATGTCGGACGAAGAAGTTCTCGTTCTTCACCTGGTCTTACACCTGCCAGTTCTGTAAGAGGCCTGTTTGTTCGCAGTGTTGTAAGAAGATGAAGTTGCCCTCCAAGCCCCATGCCAGCCTGCCCATCTCTTCTCTGGGCCCCAGCATCCTGCCCAAAAAGGAGTCTGGAGCGTCAGCCCCGGCAGAGAAGACCTCCACCACATCCAGCCACAAGCGCCATAGCCTTCAGCGTTCCATGTCCAGATCATCAAAGCACGGTGAGCACTCGACCTCCAAAGACGAGCTGGAGCTTCCCGAGCAGTTCACAGAGGACTGGAGCACCATGGAGGTCTGCGTGGACTGCAAGAAGTTCATCAATGACATCATCAGCAACAGCAGGCGCAACCTGACCACCAAACGTGCCCGTCTGCACCGCAGGACCCATTCCGTCTACATGTCCAACACCAGTTCTTCCAACTTCAAACCGTCTGAACGGACTATCAAAGAGGTTTAGGATCTGTCACGGTGTGGTCCTTCCTATCAAAACTTTCCTGTTTATACTGTTCTCACCCGTTGTGAACGTGCCAGACAGAAATAAGCTTGCTATGTGAAAGGCGTTTTGTTACGTATGACAGTACGGCCACTTTTGTTAGCTTTGTAACGTACCTTCGATACCTCTTCGTTTCCATTTAAAAAGTGCCAGAGGCGAAGGAATAAA

Function

symbol description
spire1a Predicted to enable actin binding activity. Predicted to be involved in several processes, including actin filament organization; cytoskeleton-dependent cytokinesis; and establishment of meiotic spindle localization. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in several cellular components, including cleavage furrow; cytosol; and perinuclear region of cytoplasm. Predicted to be active in cell cortex and cytoplasmic vesicle membrane. Orthologous to human SPIRE1 (spire type actin nucleation factor 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K02098 SPIR; spire

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_06895032_06942103.mRNA True 3148 mRNA 0.50 22 6894828 6942362

Neighbor

gene id symbol gene type direction distance location
CI01000054_06874039_06875193 NA coding downstream 19519 6873320 ~ 6875309 (-)
CI01000054_06835747_06861855 FAM91A1 coding downstream 31749 6834420 ~ 6863079 (-)
CI01000054_06830485_06831336 FAM84B coding downstream 63492 6828992 ~ 6831336 (-)
CI01000054_06629482_06641861 TRIQK coding downstream 252668 6628082 ~ 6642160 (-)
CI01000054_06503408_06508723 NA coding downstream 384760 6503233 ~ 6510068 (-)
CI01000054_06946694_06947533 NA coding upstream 3020 6944557 ~ 6947680 (-)
CI01000054_06951426_06955263 ATP6V1C1, ATP6V1C1B, ATP6V1C1A coding upstream 9064 6951426 ~ 6955263 (-)
CI01000054_06956328_06957402 NA coding upstream 13959 6956321 ~ 6958488 (-)
CI01000054_07006908_07009054 RPL30-PS10, RPL30.S, GM7429, RPL30.L, RPL30 coding upstream 64513 7006875 ~ 7009054 (-)
CI01000054_07026336_07030820 UK114, RIDA coding upstream 83785 7026147 ~ 7031509 (-)
G233803 NA non-coding downstream 5807 6888708 ~ 6889021 (-)
G233799 NA non-coding downstream 10314 6884308 ~ 6884514 (-)
G233791 NA non-coding downstream 29317 6865385 ~ 6865511 (-)
G233770 NA non-coding downstream 116517 6778112 ~ 6778311 (-)
G233747 NA non-coding downstream 159452 6735128 ~ 6735376 (-)
G233627 NA non-coding upstream 18011 6960373 ~ 6963408 (-)
G233812 NA non-coding upstream 68702 7011064 ~ 7011977 (-)
G233822 NA non-coding upstream 97749 7040111 ~ 7049000 (-)
G233843 NA non-coding upstream 130464 7072826 ~ 7073170 (-)
G232274 NA other downstream 1685588 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 2222595 4670151 ~ 4681361 (-)
G231645 NA other downstream 2912005 3981847 ~ 3982823 (-)
G230908 NA other downstream 3831485 3057648 ~ 3063343 (-)
CI01000054_07165957_07169539 HEYL other upstream 223073 7165435 ~ 7169539 (-)
G235216 NA other upstream 2305677 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 2540785 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 2920959 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 3861509 10816015 ~ 10819362 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location