CI01000054_07130499_07136946


Basic Information

Item Value
gene id CI01000054_07130499_07136946
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7130315 ~ 7136946 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_07130499_07136946.mRNA
GGGTGTGTTGTGGCAATCTGGAGGAGCAGAAGGGGCTGATGAAGATGGGCCTTTGTATGGTGTTAGTAGGGCATGTGAACTTCCTGCTGGGTGCTCTGGTCCATGGTGTGGTGCTGAGACACTTCAGCCTGCAGCGGGGACAGGCCATGGAAAGCGCCATCTCTAACGTCATAGCTCTGACAGCGGGCCTGCTGGGTGTCATTATCGGGATATTGACTATTGTTCTGTCCAAAAATGAGAAGAACAGGCTACTGACTTTGTCACTGCTCGTGTTAAGTGCTGTAGCTGGTTTAGTGGCTGCCGCCTCAGTCATCGGTCTGATGGTGTCCTTGGTAAAGACCATAATTCATGGCGACAAGAGACTACTCGCTTACTGTGGCTACAATGATGGCAGGAGTCACCTAACCATTGCCAATGAGTGTCCTTTTGACCCCACTCGTATTTTTAGCACCACGATTGTCCTCTGGGTCCCATTGATACTAATGAGTGCAGTGGAGATGGTGTTCTCTTGCCGCTTATTTAAGGTCTCCATCTCCTACCTCGTTCAGTCCTGGTGCCTCCGCAAACAACATCTACAAGATGAGAACAGATTGATGAAAACCCCGGGAGCGTGCGAGCCCCGCTGCGTACCTCCACTCAGTCGTTGTGAAGGAGACGAGGAGCGGAGGTTGTCTGTTAGACCCCCAGAGCGGTACAAGCCACCCTGCAACTTTCACCCGCACCGCTCCGCGTCCTCCGGCCAGTACCGCCAAAACCTCTCCTCATCCCCGTTCAACCGGGCGGCGCTGGAACGGTCCAGTATCTGGATCTGAATTTGAAACAGACCGTGGCACTGGCCTCATTCGAGGATCAAGGATAGACTACAGGTCGCATCTGATGTTTTGTCACTCACGGACCGTCACTTTTCGTTTGTTGTCAATATACCTATTCAATAGCGTCTAGTTTATGCTGTCTAGAGAGAAAAGTCAGGTTTTGCATACTTTGGGGGGTAAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_07130499_07136946.mRNA True 996 mRNA 0.52 5 7130315 7136946

Neighbor

gene id symbol gene type direction distance location
CI01000054_07080724_07095503 NA coding downstream 34642 7080352 ~ 7095673 (-)
CI01000054_07033076_07038297 STK3 coding downstream 92018 7031700 ~ 7038297 (-)
CI01000054_07026336_07030820 UK114, RIDA coding downstream 98806 7026147 ~ 7031509 (-)
CI01000054_07006908_07009054 RPL30-PS10, RPL30.S, GM7429, RPL30.L, RPL30 coding downstream 121261 7006875 ~ 7009054 (-)
CI01000054_06956328_06957402 NA coding downstream 171827 6956321 ~ 6958488 (-)
CI01000054_07165957_07169539 HEYL coding upstream 28810 7165435 ~ 7169539 (-)
CI01000054_07228008_07231489 ATXN1A, ATXN1 coding upstream 90648 7227594 ~ 7231489 (-)
CI01000054_07311700_07314853 NA coding upstream 174594 7311540 ~ 7317174 (-)
CI01000054_07368294_07372480 FAM8A1A coding upstream 231146 7368092 ~ 7373799 (-)
CI01000054_07385840_07388475 PMP2, FABP11A, FABPH coding upstream 248846 7385792 ~ 7389417 (-)
G233843 NA non-coding downstream 57145 7072826 ~ 7073170 (-)
G233822 NA non-coding downstream 81315 7040111 ~ 7049000 (-)
G233812 NA non-coding downstream 118338 7011064 ~ 7011977 (-)
G233627 NA non-coding downstream 166907 6960373 ~ 6963408 (-)
CI01000054_06946694_06947533 NA non-coding downstream 184430 6944557 ~ 6947680 (-)
G233881 NA non-coding upstream 3066 7140012 ~ 7140351 (-)
G233896 NA non-coding upstream 40894 7177840 ~ 7178439 (-)
G233899 NA non-coding upstream 44823 7181769 ~ 7182120 (-)
G233907 NA non-coding upstream 56053 7192999 ~ 7198957 (-)
G233915 NA non-coding upstream 68962 7205908 ~ 7206180 (-)
CI01000054_06629482_06641861 TRIQK other downstream 476302 6628082 ~ 6642160 (-)
G232274 NA other downstream 1921075 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 2458082 4670151 ~ 4681361 (-)
G231645 NA other downstream 3147492 3981847 ~ 3982823 (-)
G230908 NA other downstream 4066972 3057648 ~ 3063343 (-)
G235216 NA other upstream 2111093 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 2346201 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 2726375 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 3666925 10816015 ~ 10819362 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014157 tmem54b coding NC_007130.7 CM002903.2 32603627 ~ 32619257 (+)