CI01000054_07189617_07192052 (ZBTB8B)


Basic Information

Item Value
gene id CI01000054_07189617_07192052
gene name ZBTB8B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7187977 ~ 7192069 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_07189617_07192052.mRNA
GTATAAATATGTGGATGCCGCTGACACTCAAAGTAGTGCACTATATAGGGGATAGGGAGCAATTTCGGGGTCGTACACTACGCCCGATTCTATGGCAGCGACAGGAAGTATAAAGTAGAAATCAGGAAGCAGTCAACAGGGAGACATTTTTAAAAGACCATCATGAACAACAACCAGCCATACACTTGAATGTAAGTATAAACAAATTACTGTTGTCGTCGAACAATCAGTTTTTAGCATCAAAGATAGTAGTCATGTGTTTTTCATACACTGTTGTTCCGTGTGCACTGGATCGGATTGCTTCCCATAATTCGATTATTACTTAACTTCATTGCTGTAAAACATAACATATGCTATGCATTTCTATTATTCGTGAATTATAACCACTGATGTGTAGCGCGAGCTCGATTTGGTCAGCTTTTGATATGATTGTGACAGTGATTCGATAATCTATATTCCACCTTAAATGTTTATATGGCGAATTGTGCAGTTAACTGTGAATATATACTGTATACAGTAATTACACCCTTTTTTACATCTTCAAATGTTATATTATGTTTGTGCTTTTAGAAATGGGTCTTTACTATCTTTAATTGGACCTATCATTTTGTATTTTAGGCTAAACGCACAAATTATGTGCTTTTTGCAAATGTAATTGTTGCAAGTGAAATTGTTTAGTTGATTATGATTTATTTATTTATTAATTAATATCAGGGTTTACTTTCACTCAACTAGTTAAGATGTGTGACAAAAAAAACGGGGACGTCTCGTTACCCAATTTTATGTTTGTGAAGCTTATAAGAAGCTTTTAAAGGGTAGTTCACCCAAAAATGAAATTTCTGTCATTAATTACTCACCCTCATGTCGTTCCACACCCGTAAGAACGACCGTATTTGGAACGCAACTTAAGATATTTTTGATGAAACCCAAGTTTTTTTATTTTTTTTTATCCCCCCATAGAAAGCAACGTAATTACCTTCATTCAAGGTCCAGAAAGGTATTAAAGACATCGTTAAAACAGTCGACGTGACTGCAGTGGTTCAACCTTAATGTTATGAAGTGATGAGAATACTTTTTGTGTGCAAAAACAAATAAAAAATAATGACTTTTATTCAACAATTTCTTCTCTACCCTGTCAGACTTGTACGCAGTTGATGCAGTTCAGCACTTCTGTGTTTACATCCGAACGCCGGCTCAGTATTGTCCGGCTCCTGTGCCAGCATCACACACATGCGTCGTGCTGCTCACGTGACCAGGCGTTGGCCAATACTGAGCTGGCGTTCTGACGTAGAACCTGGAAGCGCTGCAACGAAAATAGCGTAGGAGAATGACCGGGGAGAAACTAATTTGTTGAACAAAGTCGTTATTTTTGTTTTGTTTTTGCGCACAAAAAGTATTATCGTCGCTTCATAACATTAAGGTTGAACCACTGTAGTCACGTTGGATTTTTTGAGTTCCGAAGATGAAAAAATGACATAAGGGTGAGTAATAAATTACAGAAATTTTATTTTTGGGTGAACTAACCCTTTAAGAGTTTGAGAATATGGAATTATTTCATAGGATATCTTTCGCATGATCAACGATTCATTGATTTATTCTTTAACCCTAACAGAGAAACATATGGCTCTCCTACGGTGAATATGGAGGTTCCTTCCTATCTGTCCAGGCTCTTGTCAGAGCTGAACGAACAGCGTAAGAGGGACTTCTTCTGTGACTGCAGCATCATAGTAGAGGGACGTGTTTTCAAAGCACATCGTAATATTCTCTTCGCCAGCAGTGGTTATTTTCGGGCTTTGCTGGTGCATTACCTAAAAGACAATGGTCAGCGACACAGCACGGCCTCTCTGGACATCGTCACAGCCGAGGCGTTCTCCTTCATCCTGGACTTTTTGTATTCAGGTCACCTGGACCTGCGCAGCGACAATGTCATTGAAATAATGTCAGCTGCGAGCTACCTACAGATGACCGATGTGGTGAACTTTTGTAAGGGCTACATTAAATCATCCCTGGAGATCTGTAACAGGGAGAGGGAAAGACACAAGGACAGGGAGGGCTTGGATCATAGTGCAACCCCACTTTCAGTCACTAGTGCCCCTGTGGCATCCACTTCCGAAGCCGACCAAAGGACCTGTCAGGTCACCGAAGCCCTCAGCCCTGATGATGCCCCAACGGCTGCTATCTGCACACCAGCGGCCACCAGTAGTAAAGACTCAGAGAGCGAAAACTCTCAAGGAGCATTTCCCAACCATCCTCCCATGAATGCTCCACTGAAGATCAGCCCAGGCCCAGATTTAGTCAACTCATCCACCCCAGGTCTGCTTCTGGGGTTGGTGAACCCCAAAATAGAGTATGACCCTGATGAAGAGGGCGAATCTTCACGGGAATCCAAAGAAACGACTCTTTATCAAGGTCCAAATCACGACGGGGAAAGAACAGTTAACACTAGCCCGGCTCCAAGCACTGAACACTCCTCCGTATCATTTGCTAACTGTCCTATGAAGCAGTTTCCAGACGTGCTGTACAGAGCGGGGATGAACCCAAACCGGGATGAACACTATTCCCAGAGTTTGGGGTACGTTGGATTCGGCCGTGGTGATGATGTACTTGGTCCTCCTGTCCCCTGTGGGATGGAGATTCAGAATGACTGGTATGGGGATGATCCAGGGAGACTGCACAAATGTCCGTTCTGCCCATATACGGCCAAACAGAAGGGCATTTTGAAAAGACACATCCGCTGCCACACAGGAGAAAGGCCGTATCCTTGTGAGGTGTGCGGCAAACGTTTCACACGACAAGAACATCTTCGCACTCATGCAATTTCTGTCCATCGCTCCACCTGGCCCATTGTTTGCAAAGGCTGTCGTCGAGTGTTCTCAGGCATTGTGTCCCAGGGAATGAAGCGATTTGGACTTTGCGATGGCTGCACTTTTGTTACTACAACTAATGAGGATCCCTCCTCCATGAACCTCAGCATCCAGTCTGAGGCTATGGAAAGGGGCGCTAGAGACTCTGATTGGCCCATGTTTATAGTGGAAGGGGATGAAGCGGAGGCGAGTGCTAGTACTGCTGGACAGGATGATAAGCAGAATGTTGCAAAGCAGCTTGGGGAGAATGGAATGGTAGATTCATTACCATAGTTACACTTGTTTACCAA

Function

symbol description
zbtb8b Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB8B (zinc finger and BTB domain containing 8B).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10495 ZBTB8; zinc finger and BTB domain-containing protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_07189617_07192052.mRNA True 3154 mRNA 0.43 3 7187977 7192069

Neighbor

gene id symbol gene type direction distance location
CI01000054_07145831_07153505 NA coding upstream 33323 7145505 ~ 7154654 (+)
CI01000054_07119711_07124720 HPCA.S, HPCAL1, HPCA, HPCAL1.L coding upstream 63207 7119711 ~ 7124770 (+)
CI01000054_07040367_07056299 5NT1A, NT5C1AA coding upstream 130407 7040367 ~ 7057570 (+)
CI01000054_07019424_07021726 NA coding upstream 165666 7019424 ~ 7022311 (+)
CI01000054_07011099_07011947 NA coding upstream 175879 7011023 ~ 7012098 (+)
CI01000054_07193147_07196114 FUCA1.1, FUCA1.2 coding downstream 1078 7193147 ~ 7196219 (+)
CI01000054_07198599_07202146 FUCA1.1, FUCA1.2 coding downstream 6530 7198599 ~ 7202293 (+)
CI01000054_07209423_07216395 GMPR coding downstream 17354 7209423 ~ 7217210 (+)
CI01000054_07240475_07241355 NA coding downstream 48354 7240423 ~ 7242458 (+)
CI01000054_07252016_07252204 NA coding downstream 59732 7251801 ~ 7252417 (+)
G232948 NA non-coding upstream 5822 7181902 ~ 7182155 (+)
G232944 NA non-coding upstream 9344 7178248 ~ 7178633 (+)
G232942 NA non-coding upstream 11402 7176339 ~ 7176575 (+)
G232914 NA non-coding upstream 120324 7067414 ~ 7067653 (+)
G232848 NA non-coding upstream 178754 7007111 ~ 7009223 (+)
G232907 NA non-coding downstream 26070 7218139 ~ 7219649 (+)
G232904 NA non-coding downstream 107611 7299680 ~ 7330015 (+)
G233034 NA non-coding downstream 154734 7346803 ~ 7347003 (+)
G233010 NA non-coding downstream 170134 7362203 ~ 7387184 (+)
G233050 NA non-coding downstream 197075 7389144 ~ 7389348 (+)
G232870 NA other upstream 299474 6887912 ~ 6888503 (+)
G232659 NA other upstream 812083 6374850 ~ 6375894 (+)
CI01000054_06305908_06312122 NA other upstream 881117 6305908 ~ 6312163 (+)
G232558 NA other upstream 1146114 5993660 ~ 6041863 (+)
CI01000054_05608892_05634793 RNF19B other upstream 1563302 5608457 ~ 5634804 (+)
G233024 NA other downstream 375454 7567523 ~ 7609893 (+)
G233306 NA other downstream 1112530 8304599 ~ 8304949 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other downstream 1113868 8325126 ~ 8329716 (+)
G235560 NA other downstream 3196067 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 4372907 11564820 ~ 11568999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014905 zbtb8b coding NC_007130.7 CM002903.2 32505747 ~ 32518556 (-)
rainbow trout (Oncorhynchus mykiss) G2358648 NA non-coding NW_023493711.1 JAAXML020000834.1 252322 ~ 252703 (-)