XLOC_009872


Basic Information

Item Value
gene id XLOC_009872
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22575143 ~ 22579326 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021926
taaaacgtAACAGaataatactgccaaaataatacagctgagaacaaataatagatttaaaagaccgaAAACTGGCCGTTAGATatacacaaaatgtattaaatattgtgttttaactACAAGAGGGAGATTGAATCCAGCGGCAGATGCGAGATTGACTAGCCGAAGTAAAAGCTGCTGTCGGCGGGGGAGAGAATCATAAAGCTCCCGCTGACAGAGTCCGCATTCACTGAAGCACATTGTCAAAAAAGCGCTGTCTTTGTATataaactgccgattcgagtttaaaacaactacattctcgcctgaaataCTCTTAAAACTACATTTTGCGACACATTGgatgatatttttttaaacttgcagGTCTGCACAGCAGGGTATTGTCCATTGACTTTCACTTAGCATTAGCAGCCAGCAAATTTGAATTCGTGTTGTCCAATAGGATTCTTGCCCGCGCCGTGCATTCATAATGCGAGCTGATTACGTGCGACGGTTAAACTCCAGCTGTTGCACTGTTGTTCTGACGCTCTTCTCGGCGTCGATGGAGGATGGACTTGAAGGACGCAAAGAAGCTGGAATACGCTCGTGAAGACGAAGCACAGACATTTGCAGGTaagtttaatgttaaataactTATTGTAAATATCCGTTGGGTCATATTCAATTCATATTTGACGTTACTTTGCCTTGTGTATGTAGTTAAGATTACCGTCGAGTTACCTGCCGCGTGAGGGGACCCTTTTGTAATTTAAGGTTGACcagaaattaaaatatgattttcacATAACCTGGCCATGAGACAGAGCTCAAAACACTGACAAAACAGCGGTGAAACATTCAGAGAAACAGTTCAAACACATTTCGTTTTGTTTGGATAACGTTAATGTTGTTAAGCCTTTATTGCATACCTTATTTATAAACTCAGAATTTCCTTAGTGTTGGGAAGCTAACGTTCATGCTAACGTTCATGTTTACTCCGGAAAGGAGTGAAGTGAATGCCTTCAtgtctgaaacaatataactttaGTTTATGCATATCTCGACCCACGTCCATTTATAGCAGTTGTATTTTGCAacgttacatatttaaataacgtTATAAATGCATGTCCAAGAGAGTCATAATCATCTGTCTTGTCAGATCGAGGTGCGGGTCATTAATCAAACCTTTAAGTTgctaatttaaagcttttttttttttttgctgttaaaaaaGTTCACAccgatcatgatttttttttctttttagaagaTGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTAAGTATTTAGTATTTcatctgtgtatatatatgtatatgtatgtgtgtgtgtgtgtatactttttCCCCAGGAATTCATTGTGCAGTCTTAAATTTAATCTCCCTTTTTCTATGAAACTGTTAGGTGAAGTGTTAAAGTTAAATTTGAATTGTTATGATTGTCATTATTTTGGACTTATATTTGATCCAATAGGTGATTGCTGCAATTGGTGAGGATGCATCATCTTTTAAGAGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGGTGTGTGACCCTTTATTAAAATTACCCTTATCAGTGAGAtcacacattttaaatcagttctcagtttaaatgaaaagtttaatGTCAGTATAAGCCTAAGTGTAGGATTAAAtaactattataaatgttatgactattgtaaaaatattttaattttcaagCTTTGTGGTGAACACGTATGTGCATTCAAGCTTACAACTATTTGTACAGTGATAACTAAAGGGAAATGGCAACAAAGAATATTAGATAATGTTTTTAGTTAAAGTGAATCACTAATttcctttttgtttattatagtcaTGGTGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAGGTGCCTGAgcttaattaagaaaaaaaagcatCTCCACTGGCCAAAGTCTACAAAAAAGCAAGAGAATAGAAGTTTGCA
>TCONS_00021710
GACAGAGTCCGCATTCACTGAAGCACATTGTCAAAAAAGCGCTGTCTTTGTATataaactgccgattcgagtttaaaacaactacattctcgcctgaaataCTCTTAAAACTACATTTTGCGACACATTGgatgatatttttttaaacttgcagGTCTGCACAGCAGGGTATTGTCCATTGACTTTCACTTAGCATTAGCAGCCAGCAAATTTGAATTCGTGTTGTCCAATAGGATTCTTGCCCGCGCCGTGCATTCATAATGCGAGCTGATTACGTGCGACGGTTAAACTCCAGCTGTTGCACTGTTGTTCTGACGCTCTTCTCGGCGTCGATGGAGGATGGACTTGAAGGACGCAAAGAAGCTGGAATACGCTCGTGAAGACGAAGCACAGACATTTGCAGaagaTGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTGATTGCTGCAATTGGTGAGGATGCATCATCTTTTAAGAGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGtcaTGGTGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAGGTGCCTGAgcttaattaagaaaaaaaagcatCTCCACTGGCCAAAGTCTACAAAAAAGCAAGAGAATAGAAGTTTGCAGATGATACTACAGggtgtcacagtggcgcagtgggtagcacgatcgcctcacatcaagaaggttgctggttcgagactcggctgggtcagttggcatttctgtgtggagtttgcatgttctccccatgttggcgtgggtttcctccgggtgctccggtttcctcgacaagtccaaagacatgcggtacaggtgaattagtgggatgatgatgatgctccATACCCAACTCTACAGATGGTTGAAAGTCCTTTGCAAAATGTAGGAGAACAGGAGTTAAAAGGCATTATTACATCCTTCGCTGTTTACTGTGTTTTCAACTTGGCTTATCCACGctacataaagaatgcaaaggATGAACATCAGCAACTCCCCAAGATGGAGCAACACTTTAAATTTGGACAACAGCAACGATCAGTGCAGCTGTCCGAGAGAACTGGTATTGCTGCGTCTGCATCAAACAGCAATGCTTGGATCTTTGCATTTACTTTGGTGCATGCGTTTCGAGTCTGTGCATCAGTGTTTTAAGACTAGCAGCTATAGACATTTCAATAACATTGCCCAAATTAACTGAGAAGCACAAGATGAAACAATGCTAAGAATTTTCTCCGCCCAACATCCTTGATGAGATTGACACCTTCAGGTGTTCAAATTGAACTGTTTTCGTGTGCATGTGAGACTGCTAATGGAGAAGAAATGACTCTTTcctaaagaaatacattttaaatgtcaatactGCACTGGTTTCTGTGTGGCAAGTTTTTAATACTGGTGTTGTATGATTCATATTTCCATGCAAATACAGTAAGAGTTTGACTTTGAATGGGGTGGTATAAACCAAGACAGACGGACTTTCAGGCTCTTGAAACATACTCTGCTGATAAACTGTTTCttaagaatgtttagaaattttaaatcaaatgtgTAATACTGTTCGATCAAAAGtgtttttgagatctaaaatgaTAAAGGGTATACAGTAAGTGACATGTTTCAATGTACTGTATGGAAAAAGATTGCGTTGAGATTCTTGATGCTTTTAGAAAATGTAGAATGCAGTGCACTAACAAAAATGTACTTTATGAGGTCTAGTGCTGTTTTAGAAAGATTACTTTGTTACATTGGTAAAAAGGCTCAGTGAAATGGGATGTACTggtgttaaaaaatataatattaagctttttcgctgtttcataaaatgttttaaaatgtttaagcagcTATTTTTTAGGTTTATGCATCTGGTATGACATTGTGAAACTTTTCAAAAAACTTTCATCTTCTAAAAAGGTGACAATGTAATTGTTTTGAATCTTtcaatgtgtgtttgtgataaAATGTTACTggtataaaattacaattatcgTGCAGTTTGTACTCATggaaaaatattgctttttattcttttaaaatgatgtaatgtttaaacattcatcctctaaaaatgttgatatttaatgtttaataaatgtgataaatg

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0072359 circulatory system development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0007507 heart development biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0003401 axis elongation biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0035295 tube development biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010470 regulation of gastrulation biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003260 cardioblast migration biological_process
GO:0003002 regionalization biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0060026 convergent extension biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process
GO:0097028 dendritic cell differentiation biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021926 False 2012 lncRNA 0.36 1 22575143 22577154
TCONS_00021710 True 2149 lncRNA 0.39 6 22575355 22579326

Neighbor

gene id symbol gene type direction distance location
XLOC_009871 C16H1orf43 coding upstream 213924 22345513 ~ 22361219 (+)
XLOC_009870 NA coding upstream 246115 22327970 ~ 22329028 (+)
XLOC_009869 NA coding upstream 247641 22323766 ~ 22327502 (+)
XLOC_009868 NA coding upstream 461207 22022291 ~ 22113936 (+)
XLOC_009867 znf687a coding upstream 637099 21917673 ~ 21938044 (+)
XLOC_009873 she coding downstream 8335 22587661 ~ 22603354 (+)
XLOC_009874 chrnb2 coding downstream 39294 22618620 ~ 22678294 (+)
XLOC_009875 NA coding downstream 115900 22695226 ~ 22696496 (+)
XLOC_009876 CR854942.1 coding downstream 182520 22761846 ~ 22790881 (+)
XLOC_009877 flad1 coding downstream 284987 22864313 ~ 22881338 (+)
XLOC_009866 NA non-coding upstream 697722 21874395 ~ 21877421 (+)
XLOC_009862 NA non-coding upstream 940307 21634387 ~ 21634836 (+)
XLOC_009889 CR533578.1 non-coding downstream 1027905 23607231 ~ 23607352 (+)
XLOC_009902 NA non-coding downstream 1439782 24019108 ~ 24028618 (+)
XLOC_009903 NA non-coding downstream 1619153 24198479 ~ 24207903 (+)
XLOC_009904 CT867948.1 non-coding downstream 1936766 24516092 ~ 24524076 (+)

Expression


Co-expression Network