CI01000054_07193147_07196114 (FUCA1.1, FUCA1.2)


Basic Information

Item Value
gene id CI01000054_07193147_07196114
gene name FUCA1.1, FUCA1.2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7193147 ~ 7196219 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_07193147_07196114.mRNA
ATGCAGGTGACTCTGAGTCAGATATCGCTGCTTCTTTGTTTACTATCATGCGCATCAACAAACGGGGCTCGATATACACCAGATTGGGCCAGTCTGGACTCCAGACCTCTGCCTGAATGGTACGACGAGGTGAAGTTCGGGATCTTCGTTCATTGGGGGGTGTTTTCAGTGCCCGCGTTCGGCAGCGAGTGGTTCTGGTGGAACTGGAAGGGCGCACAAAAGTCTAATTATGTCCAGTTCATGATCAAAAACTACCCCCCTGGATTCAGCTATACCGACTTCGCACCTGATTTCCACGCGCAGTTTTTTGATCCTGATGAGTGGGCTGATATCTTCGAAGCTTCAGGAGCAAAATATGTGGTCCTCACATCGAAACACCATGAAGGCTTCACAAACTGGGGGTCCCCAAATTCCTGGAATTGGAATTCTGTTGATAATGGACCTCACAGGGATCTTGTTGGAGATTTGGGCTATTCAATAAGAAAGAGGTCTCTGCATTATGGACTCTACAGCTCTCTGTATGAATGGTTCAATCCCGTCTACCTGAGTGACAAGCAAGCTGGTTTCAAGACCCAGGAGTATGTTGCAAAAAAAGTTTTGCCAGAACTCACCAATCTGGTCAACAGGTACAAGCCAGACTTGATTTGGTCAGATGGGGACTGGGAAGCACCTGACACTTATTGGAACTCTACAGAATTCCTCGCCTGGCTCTACAACGACAGTCCAGTCAAAGATGTGGTAGTGACCAATGACAGATGGGGGGCAGGCTGTTCCTGCAAACATGGAAGTTATTACAACTGTGCGGACAAGTTCACTCCTGGACAGCTGCCTAATCACAAGTGGGAGAAATGCCAGTCAGTGGACATATATTCATGGGGGTATCGCAGAGACATGAAGCTAAGTGAACTGATGGATCTACCAGCCATCATAAAGGACCTGGTCTACACCGTGGCCTTAGGGGGGAATTACCTGTTGAATGTGGGGCCCACAGCAGACGGCGTGATCGTACCTGTCTTTGAGGAACGTCTCAGAGGAATTGGAGCCTGGCTGAAGATCAACGGTGAAGCCATCTATGCAACTAAACCTTGGAGAGCTCAATCTGAGAATGCTACTGTTCTTGTCTGGTATACTTCAAAAAACACCAGCACTGTTTATGCGATCTTCACCTCCAATCCCATGCAAAACACCTTTAAGCTTTCGATGCCCAAAACCTCCAACAGCACAGTGGTGACTTTGTTGGGGAACCCTGAGCCTTTGAAATGGATTCCTCTGCAATCAACAGGACTGACTGTGCAGCTGCCTGAACTGCCTTCCTCACCCGCTCAAGCCTGGACCCTCAAGCTGGACGGGGTGGCATAAAGCCTTTAAAACTTTTTAAAAAAGATTTTAATGACATTTGTTTTAAGAAAGTTTTGTATAAATCAAGTTTTTATTTTTATCCAGATGATTTGATACGACTGCTCA

Function

symbol description
fuca1.2 Predicted to enable alpha-L-fucosidase activity. Predicted to be involved in fucose metabolic process and glycoside catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in lysosome. Human ortholog(s) of this gene implicated in fucosidosis. Orthologous to human FUCA1 (alpha-L-fucosidase 1).
fuca1.1 Predicted to enable alpha-L-fucosidase activity. Predicted to be involved in fucose metabolic process and glycoside catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in lysosome. Is expressed in several structures, including EVL; epidermis; periderm; sensory system; and yolk syncytial layer. Human ortholog(s) of this gene implicated in fucosidosis. Orthologous to human FUCA1 (alpha-L-fucosidase 1).

GO:

id name namespace
GO:0006004 fucose metabolic process biological_process

KEGG:

id description
K01206 FUCA; alpha-L-fucosidase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_07193147_07196114.mRNA True 1464 mRNA 0.47 8 7193147 7196219

Neighbor

gene id symbol gene type direction distance location
CI01000054_07189617_07192052 ZBTB8B coding upstream 1078 7187977 ~ 7192069 (+)
CI01000054_07145831_07153505 NA coding upstream 38493 7145505 ~ 7154654 (+)
CI01000054_07119711_07124720 HPCA.S, HPCAL1, HPCA, HPCAL1.L coding upstream 68377 7119711 ~ 7124770 (+)
CI01000054_07040367_07056299 5NT1A, NT5C1AA coding upstream 135577 7040367 ~ 7057570 (+)
CI01000054_07019424_07021726 NA coding upstream 170836 7019424 ~ 7022311 (+)
CI01000054_07198599_07202146 FUCA1.1, FUCA1.2 coding downstream 2380 7198599 ~ 7202293 (+)
CI01000054_07209423_07216395 GMPR coding downstream 13204 7209423 ~ 7217210 (+)
CI01000054_07240475_07241355 NA coding downstream 44204 7240423 ~ 7242458 (+)
CI01000054_07252016_07252204 NA coding downstream 55582 7251801 ~ 7252417 (+)
CI01000054_07271120_07280248 NA coding downstream 74687 7270906 ~ 7280365 (+)
G232948 NA non-coding upstream 10992 7181902 ~ 7182155 (+)
G232944 NA non-coding upstream 14514 7178248 ~ 7178633 (+)
G232942 NA non-coding upstream 16572 7176339 ~ 7176575 (+)
G232914 NA non-coding upstream 125494 7067414 ~ 7067653 (+)
G232848 NA non-coding upstream 183924 7007111 ~ 7009223 (+)
G232907 NA non-coding downstream 21920 7218139 ~ 7219649 (+)
G232904 NA non-coding downstream 103461 7299680 ~ 7330015 (+)
G233034 NA non-coding downstream 150584 7346803 ~ 7347003 (+)
G233010 NA non-coding downstream 165984 7362203 ~ 7387184 (+)
G233050 NA non-coding downstream 192925 7389144 ~ 7389348 (+)
G232870 NA other upstream 304644 6887912 ~ 6888503 (+)
G232659 NA other upstream 817253 6374850 ~ 6375894 (+)
CI01000054_06305908_06312122 NA other upstream 886287 6305908 ~ 6312163 (+)
G232558 NA other upstream 1151284 5993660 ~ 6041863 (+)
CI01000054_05608892_05634793 RNF19B other upstream 1568472 5608457 ~ 5634804 (+)
G233024 NA other downstream 371304 7567523 ~ 7609893 (+)
G233306 NA other downstream 1108380 8304599 ~ 8304949 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other downstream 1109718 8325126 ~ 8329716 (+)
G235560 NA other downstream 3191917 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 4368757 11564820 ~ 11568999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014903 fuca1.2 coding NC_007130.7 CM002903.2 32488572 ~ 32493866 (-)