CI01000054_07368294_07372480 (FAM8A1A)


Basic Information

Item Value
gene id CI01000054_07368294_07372480
gene name FAM8A1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7368092 ~ 7373799 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_07368294_07372480.mRNA
ACAACAAGCATCCAGGGACAAAACAGGGTTGTTTCCGGCAGACAGTTTTTGAAGCCGTCTACCTTTGATCCTTTTGCATTGACATGTGGATGTCTAGATAAGCACAATTAACTTTAGCCAGTCAGTACACCTACTAAAAGCTTATACTCAAAAAGTAATTTAAATCAAATTTTGCAATTTTACTATATATATATATACATATATATATATATATATATATATATAGTAAAATAATTAGCAAAATTTTTAAACTTTTTGAGTATAGTGAGTGTTAAAAATACCAAACTTACCAAACTTCCAAAAATAAATAATTATTTTTATAAATTATACTAGTAGTCTACCACTACCACTGTATTATTTTCTAATTTTCCAAAAGTTTCAGATAAATCATTTTTGTAGTGCTTTTAATAATAATAATAATAATAATAATAATAATAAAAGTTAGATGAGAAAATAGCAAGTTTTCATCAATGTGTATCGTCAAGGATATAATTATGATAATAATTATTTTATTGTTTAATTATAGTAATTATTTTATCATAACTCCTGAATCTCAAACAGTAGAGTGTGGTGCTTGCAATGCAAAGGTCATGGGTTCGATTCCCAAGGAATGCATGAATGATGAACTGATAAAATGTATAACTTTAGGCTAATTAAAGGGATAGTTCACCCAAAAATGAAAATTCTGTCATCATTTACTCACCTTCAAGCTGTTCCAAACCTGTATAAATTTATTTGTTCTGCTGAACACAAAGGAAGATATTTTGAAGAAAGTTTGTCCAGGCCACTTTGGGGTGACTTCCATAGTAGGACAGAGCAAAGAAATTTATACAGGTTTGGAACAACCTGAGGGTGATCAAATGAAGACAGAATTTTCATTTTTGGGTGAACTAACCATTTAATGCAATGTAAGCTAAGTCACTTTAGATAAAAAGAGTCAGCCAAATGCATATAGTTTTAGATTAATCATGACTGTCTTTTCTTTGATTGCGTTACATCCTTTACAGTCTATGCTACATCCTAATGGTCTTTGCAGCCTGCACCACTATTGGACATCACAGGGGTGCACAAACAGTTGATGTAGTTTAATTTTGAGTTACTTGCACAATTTGTGTCTTTTGTAGCAGACACGTCTTTTTGCTATGATAAATGTAATTATAGAAACTGTCTTAGGCTTTTGAAGCGAAAAACACCAACTCCAAATATATTAGCATAGTGGTATATTCTGGCTTGAATGAGCAGTTGTCATGGCCGCTTCCTGAGGAGATTAGCCTCTATAGGAAGTGGAAGTCTAAATAAGATTAATAAAAGGAGTCAGCATGACAGCGGATAGTACAGAAGAAACGGTCAAAAACCGTCAGGAATCCGATAACAGTGACAACATGACAACGACTGAATACTGCGCGCAGCTGCAGCAGTGGATGTGGCGCTATTACTGTGGCTATGCGAGCTGGCAGAGTTGGGTGTTCATGTCCGCGCCGCTGTTTCCTCCGCCTCAGTTCGGTTGCCAGGCACCCGGCAGCTCCACATCTGCATATTCCGCGACGCCCGCTGACATCGCCGCCTGGTATAACCAGACGAGCCCACCGTCAAGCCGTCCAGCAGCTATTGCCACATCCAGCACTGCTGACAGAGGACCAGCACAGCCTGCAGGTAGAGAGTACACCATCCCCTCCCCTTTGCGTAGATTTCTGGCTGAAACTGTGGATTTCTTCCTTCTCTTCTGTGTAAAGGCAACCATAGTGTTGTGGATCATGCATCTCAGTGGAATGAAGGATATTTCCAAATTCATGATGCAGTTTATTGTGGAAGAGATTGATGAGACCACATCTTTGGAGGACCTGCAAAAGATGATGGCCGTGGCTTTAGCATACAGAGTCCTTGTGTGCGTCTATGAAATCATCTGTATTTGGGGAGCTGGAGGTGCCACTCCGGGAAAGTTCCTGCTGGGTCTTCGAGTCGTCACATGTGATACGACAGTCCTAGTGCAGCCGAATCGGGTTTTGGTGGTACCGGCATCCAATGTCAGCTTATCTGCATTCAAGGTTTATGGCCCAGACGAGTCTGTTATTAATCTTACCAAAGGCAGGGAATTGAGCTCGCATTCATCACGTATTCTTCCACACATGCTTGCAGCCGTCCGGAATGTTCCATTCCTGTTGTAAATTCAGTCGGTGGCTGATATGCCTCACTACATTTCTCAGGGTTTCTTAAAAACCTGTTGTACGTGTCCTGTGTTTCAGTTATGATCTTTGATATGTAAAGAATTAAGTGAAATTCACATTATCTGCCCTACAGTATTAGGTATGCTAAACACATCAGCTGTTCTGATTTTTCACGGTGCATGGTTCATAAAAATATATTAAA

Function

symbol description
fam8a1a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human FAM8A1 (family with sequence similarity 8 member A1).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_07368294_07372480.mRNA True 2367 mRNA 0.39 5 7368092 7373799

Neighbor

gene id symbol gene type direction distance location
CI01000054_07311700_07314853 NA coding downstream 50918 7311540 ~ 7317174 (-)
CI01000054_07228008_07231489 ATXN1A, ATXN1 coding downstream 136603 7227594 ~ 7231489 (-)
CI01000054_07165957_07169539 HEYL coding downstream 198553 7165435 ~ 7169539 (-)
CI01000054_07130499_07136946 NA coding downstream 231146 7130315 ~ 7136946 (-)
CI01000054_07080724_07095503 NA coding downstream 272419 7080352 ~ 7095673 (-)
CI01000054_07385840_07388475 PMP2, FABP11A, FABPH coding upstream 11993 7385792 ~ 7389417 (-)
CI01000054_07390631_07391977 MRPL53 coding upstream 16787 7390586 ~ 7393103 (-)
CI01000054_07398765_07399272 NA coding upstream 24755 7398554 ~ 7400054 (-)
CI01000054_07418471_07418846 NA coding upstream 44368 7418167 ~ 7418853 (-)
CI01000054_07516390_07526784 TPD52 coding upstream 142368 7516167 ~ 7527449 (-)
G233922 NA non-coding downstream 29976 7337904 ~ 7338116 (-)
G233904 NA non-coding downstream 141247 7220031 ~ 7226845 (-)
G233915 NA non-coding downstream 161912 7205908 ~ 7206180 (-)
G233907 NA non-coding downstream 169135 7192999 ~ 7198957 (-)
G233899 NA non-coding downstream 185972 7181769 ~ 7182120 (-)
G233942 NA non-coding upstream 134569 7508368 ~ 7509658 (-)
G234023 NA non-coding upstream 192440 7566239 ~ 7566525 (-)
G234024 NA non-coding upstream 193157 7566956 ~ 7567186 (-)
G234025 NA non-coding upstream 193435 7567234 ~ 7567509 (-)
G234042 NA non-coding upstream 255778 7629577 ~ 7630828 (-)
CI01000054_06629482_06641861 TRIQK other downstream 714079 6628082 ~ 6642160 (-)
G232274 NA other downstream 2158852 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 2695859 4670151 ~ 4681361 (-)
G231645 NA other downstream 3385269 3981847 ~ 3982823 (-)
G235216 NA other upstream 1874240 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 2109348 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 2489522 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 3430072 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 3497305 10871104 ~ 10881495 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014154 fam8a1a coding NC_007130.7 CM002903.2 32201991 ~ 32206819 (+)