CI01000054_07385840_07388475 (PMP2, FABP11A, FABPH)


Basic Information

Item Value
gene id CI01000054_07385840_07388475
gene name PMP2, FABP11A, FABPH
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7385792 ~ 7389417 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_07385840_07388475.mRNA
AGAGTCTGGTTTTCTTGTTCTGTATCTGAATGATTATTTATGTGAAAATATGTCAGTGAAATAATTTGCTTTTGTCTGTGATATTATTTTTCTTAAATGCTTAGAAAAAAATATTTTGCTTAGAAAAATTTGAAAGTATACAGTTATGAGTTGTCTATATTCATTGTAATAAGCATGTTATTGCATAGTTATCAGAGTACAAATGGTAACATTTTGCGGTTACACTATTTTAAGATGTTATTGTTACAGTGTAATTATATATTTAAGTACAGAGTAATATTAATTAACAACATGTACTTACTATAGGGTTAGGGTAGGATAAGGGTTTGGTTGAGGGTTAGTTGCATGTAATTATGCATAATTTACTGTTATTACTTAATTTACTATTAATTTACTGTTTACCTTAGTTAATGTTAATAAAAATGTTCATATTCATGTTAATTCAGGGTGCATTAACTAGGCTAATGTTAACAGATACAACTTTTGATCTTAAAATGTATGAGTGAATGTTGAGGTTAACATTAACTAAGATAAATAAATGCTGTTTATGATTGTAAATGCTGTAATGTTAACAAAATGTTAGCACAGTGAGGGAAGGTGAGGAAAGGTTTCATCTTATAGTTGGTCAAACACGTCACTCTAAAAATATTCAGCCTACCCATGTGCATGATCTTTGTGATTATTATCCTCTGACCCAGTGAATGTTATTTGACCGTTTTTGTGGTCCCAAAAAAATGCGAACCCTTCCCCAGTCCTAGGTTGCATTTGCGGGTGGGAGGTTGAGGAACTCCGCTCAGTGACGCTGGATGATCTGATTGGCTAGTGTGATCATGCACGTGCTGGAGGAGCTATTGAAAAACCCTGCAGTCATTCGATCAGATCAGATCAAATCTGAGCTTTGAGCTGTTGTTTGAGTGACAGGGAACATCATCATCCGGAAAAATGGTTGACAAATTCGTGGGGACATGGAAGATGACCACCAGCGACAACTTTGACGAGTACATGAAGGCTCTAGGTGTCGGTTTCGCTACTCGTCAGGTGGGAAACCGGACCAAACCCAACCTGGTCGTGTGTATGGATGATCAAGGGCTCATATGCATGAAGTCGCAGAGCACCTTCAAAACTACTGAGATCAAATTTAAACTGAACGAGTCATTCGAGGAGACCACCGCAGATGATCGAAAGACTACGACTGTCGTGACTCTTGAGAACGGGAAACTTGTGCAAAAACAGTCCTGGGATGGCAAAGAGTCGACGATAGAGAGGGAGGTGACGGATGGAAAATTAATAGCTTCTTTCATCTTTTGGAATCCTTACATATCTGTTAACATCTCAGAAAAATGTGTTAAAGTGTGTAATGGTTTAATTATCCACTCGAACATTTCCCTTTTTGAACATAGTTTTAGCATGCGTAATGAAATTGGAACACAGCGAATCCCTAGAGTCGTCCTTTTGACCTACACAAAGAGCAGAGAATGTTCTACCAGTGGCTACTTTCCCAGGACAGGAAAGTGTAGAGATATACTGATTGTAATTGACTGCAAAAACAGCTGAAACAGGTGGGTTATGGGCCAGCTCTCTCTGTACAGCCTATTCAATAAA

Function

symbol description
pmp2 Enables cholesterol binding activity and fatty acid binding activity. Predicted to act upstream of or within membrane organization. Located in extracellular exosome. Implicated in Charcot-Marie-Tooth disease type 1G.

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_07385840_07388475.mRNA True 1602 mRNA 0.38 5 7385792 7389417

Neighbor

gene id symbol gene type direction distance location
CI01000054_07368294_07372480 FAM8A1A coding downstream 11993 7368092 ~ 7373799 (-)
CI01000054_07311700_07314853 NA coding downstream 68618 7311540 ~ 7317174 (-)
CI01000054_07228008_07231489 ATXN1A, ATXN1 coding downstream 154303 7227594 ~ 7231489 (-)
CI01000054_07165957_07169539 HEYL coding downstream 216253 7165435 ~ 7169539 (-)
CI01000054_07130499_07136946 NA coding downstream 248846 7130315 ~ 7136946 (-)
CI01000054_07390631_07391977 MRPL53 coding upstream 1169 7390586 ~ 7393103 (-)
CI01000054_07398765_07399272 NA coding upstream 9137 7398554 ~ 7400054 (-)
CI01000054_07418471_07418846 NA coding upstream 28750 7418167 ~ 7418853 (-)
CI01000054_07516390_07526784 TPD52 coding upstream 126750 7516167 ~ 7527449 (-)
CI01000054_07607425_07611037 STMN2A, STMN2B, STMN2 coding upstream 217083 7606500 ~ 7611037 (-)
G233922 NA non-coding downstream 47676 7337904 ~ 7338116 (-)
G233904 NA non-coding downstream 158947 7220031 ~ 7226845 (-)
G233915 NA non-coding downstream 179612 7205908 ~ 7206180 (-)
G233907 NA non-coding downstream 186835 7192999 ~ 7198957 (-)
G233899 NA non-coding downstream 203672 7181769 ~ 7182120 (-)
G233942 NA non-coding upstream 118951 7508368 ~ 7509658 (-)
G234023 NA non-coding upstream 176822 7566239 ~ 7566525 (-)
G234024 NA non-coding upstream 177539 7566956 ~ 7567186 (-)
G234025 NA non-coding upstream 177817 7567234 ~ 7567509 (-)
G234042 NA non-coding upstream 240160 7629577 ~ 7630828 (-)
CI01000054_06629482_06641861 TRIQK other downstream 731779 6628082 ~ 6642160 (-)
G232274 NA other downstream 2176552 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 2713559 4670151 ~ 4681361 (-)
G231645 NA other downstream 3402969 3981847 ~ 3982823 (-)
G235216 NA other upstream 1858622 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 2093730 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 2473904 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 3414454 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 3481687 10871104 ~ 10881495 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014153 fabp11a coding NC_007130.7 CM002903.2 32166702 ~ 32169161 (+)