XLOC_009873 (she)


Basic Information

Item Value
gene id XLOC_009873
gene name she
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22587661 ~ 22603354 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019697
ACCCCCACCCGCAGCTGTAGCTGCAGCACAAAAGCACGTACATCCACATCCCCTTCACTTCATCTAGACAGTCGCCAGGAGTGGATATACCGGGAATGGGATCTTCAGCGAGAGAAAAGAAAAACTTCAAATTCTTCCGCGTTTATGCCCTTCAGAGGCTCCTCTTTATCTTGCGGGAATAATTGGGAGCAaactaaaacaagacaatacatTCCAATGTGAAGAATCGTTGAAAGTGTAAGAAGTTTCCTGAAAAGAAATACGAATGGGATAAATTCTGTAAACAAGATTATATAAAAGGCATTTTAATTTTCGGAACCTTTCCCTAAATCAATTGTTTTtgttcaattaaataaatttattattattagcctattgTTTTAAACAAACCGCACGTTAAAGTGCAGGTAAAACATCAATAATAGGGGCCACTTTGAGTGAAATTCAAAAGTTTTCTCTCCAGCAGTTGCGCGTGTGTATGGAGAGTGGCGCAGACACCTGTGCGTATTCGTCATGGCGAAGTGGTTTAAAGATTTTCCAACTAGTTTGAAGACTGGATCCGATAGGATCCGTTCAGCTTCAGAATCGGGAACTCAGTCCCGCCCCAAGCCGGTTCTGACAGTCGGTACTGGTTCCAAGGGGAGTCTGCGTAAAAATTCTGGAGCGGAAAACGGTGGCGGTGGTGGCGGCGTGGGCTCGTTGCTTCACGGCAGAAATCGTAAAAATTCTGCCATCGAGTTAGGACGGAACCACTCCAGCACCGGCTCGATGAAAGACGGGAAGATATGGGAAATTCTGATCCCGGGGAAAAGTAAGAAGAACACCAAGATGGAAGGGTTTGAAGACCATCGCACCCTGCGGACCACCAGCCTGGCTGATGAGTACATGAGCAGAATGATCAAGGTTAATGATCCAAAATCCAGCCCAGGAGGATCTTCTCCAGACAGCGAGAGGGCCAAATCACCAATCAGAACAGAACCGATCATCGTAGAGGATTATGCCGACCCATTTGATGCTGAGAAAACCAGAGAACAGAAAGAAGCTGAAAGAGAAGGAGAGAACGATGGCTACATGGAGCCTTATGATGCCCAGCTCATTATTACAGAGATTCGCAGACGAGGCTCGAAGGATCTGCTGAAAGTGTGTGTAGTGTTGAACGGAGGCGAAGGTGAGGGGTCTGGACCCCCTCAGATCTATGATGTCCCATATGAGGAGGTTCTGGAGGGAATTCCGTTGACCCGACCTGAGTCCGACTCCAGACCGCCGGCAGAGTATGAGCTGCCCTGGGAGTGGAAGAAAGAGCAGATTGTTAGAGCCCTGTCAGCTCAGTTTGATGGAGCCGAGCGCATGTCGAAAGAAGAATCAGGTTCTCCTACTATAAAACAGCAGACTCTAAGACATAAAAGCTGGACGACCAAATCTCTACGACCGAATCCCCCCTCCCCAACCTCCCCCTCTTCCCCCAGCATCACCCCAGACAGTGAGACCCCAATTGTTGATCCCACCCTGCCATTGGAGAAAcagagctGGTATCATGGCAGTGTGAGTCGTCAGGAGGCAGAGGCTCAGCTCCAGCAGTGTAGGGAGGCCAGTTTCCTGGTGCGAGACAGTGAATCAGCCACCAGCAAGTACTCCATTGCCCTCaaGACAAGTCAAGGATGTGTGCACATCATCGTAGCGCAGACTAAAGAGTGTGGCTACACACTGGAAAAGAGCAGCTGTGTGTTTCCAAGCATCCCAGAAGTGGTACACCACTACTGTACCCAGCGCCTCCCTTTTACAGGGGCTGAACACATGACCCTGCAGCACCCCGTGCCACGCACACActga
>TCONS_00019698
CGCCAGGAGTGGATATACCGGGAATGGGATCTTCAGCGAGAGAAAAGAAAAACTTCAAATTCTTCCGCGTTTATGCCCTTCAGAGGCTCCTCTTTATCTTGCGGGAATAATTGGGAGCAaactaaaacaagacaatacatTCCAATGTGAAGAATCGTTGAAAGTTTGCGCGTGTGTATGGAGAGTGGCGCAGACACCTGTGCGTATTCGTCATGGCGAAGTGGTTTAAAGATTTTCCAACTAGTTTGAAGACTGGATCCGATAGGATCCGTTCAGCTTCAGAATCGGGAACTCAGTCCCGCCCCAAGCCGGTTCTGACAGTCGGTACTGGTTCCAAGGGGAGTCTGCGTAAAAATTCTGGAGCGGAAAACGGTGGCGGTGGTGGCGGCGTGGGCTCGTTGCTTCACGGCAGAAATCGTAAAAATTCTGCCATCGAGTTAGGACGGAACCACTCCAGCACCGGCTCGATGAAAGACGGGAAGATATGGGAAATTCTGATCCCGGGGAAAAGTAAGAAGAACACCAAGATGGAAGGGTTTGAAGACCATCGCACCCTGCGGACCACCAGCCTGGCTGATGAGTACATGAGCAGAATGATCAAGGTTAATGATCCAAAATCCAGCCCAGGAGGATCTTCTCCAGACAGCGAGAGGGCCAAATCACCAATCAGAACAGAACCGATCATCGTAGAGGATTATGCCGACCCATTTGATGCTGAGAAAACCAGAGAACAGAAAGAAGCTGAAAGAGAAGGAGAGAACGATGGCTACATGGAGCCTTATGATGCCCAGCTCATTATTACAGAGATTCGCAGACGAGGCTCGAAGGATCTGCTGAAAGTGTGTGTAGTGTTGAACGGAGGCGAAGGTGAGGGGTCTGGACCCCCTCAGATCTATGATGTCCCATATGAGGAGGTTCTGGAGGGAATTCCGTTGACCCGACCTGAGTCCGACTCCAGACCGCCGGCAGAGTATGAGCTGCCCTGGGAGTGGAAGAAAGAGCAGATTGTTAGAGCCCTGTCAGCTCAGTTTGATGGAGCCGAGCGCATGTCGAAAGAAGAATCAGGTTCTCCTACTATAAAACAGCAGACTCTAAGACATAAAAGCTGGACGACCAAATCTCTACGACCGAATCCCCCCTCCCCAACCTCCCCCTCTTCCCCCAGCATCACCCCAGACAGTGAGACCCCAATTGTTGATCCCACCCTGCCATTGGAGAAAcagagctGGTATCATGGCAGTGTGAGTCGTCAGGAGGCAGAGGCTCAGCTCCAGCAGTGTAGGGAGGCCAGTTTCCTGGTGCGAGACAGTGAATCAGCCACCAGCAAGTACTCCATTGCCCTCaaGACAAGTCAAGGATGTGTGCACATCATCGTAGCGCAGACTAAAGAGTGTGGCTACACACTGGAAAAGAGCAGCTGTGTGTTTCCAAGCATCCCAGAAGTGGTACACCACTACTGTACCCAGCGCCTCCCTTTTACAGGGGCTGAACACATGACCCTGCAGCACCCCGTGCCACGCACACActgaacccacacacacacacacacacacaaaaaacatgctGAACTTAAACATACCATTTTATGAAGCAAAACATGAATCTTCAATACCGTGGTGCCAGCCAATCATATTTACACTCTTATACTGTGTCCTAACCAGACAAAATGCGATACAATACCAATACAATGACA

Function

symbol description
she Predicted to enable phosphotyrosine residue binding activity. Is expressed in several structures, including blood vessel; hindbrain; lateral line primordium; post-vent region; and vascular cord. Orthologous to human SHE (Src homology 2 domain containing E).

GO:

id name namespace
GO:0001784 phosphotyrosine residue binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090915-6 Predicted to enable phosphotyrosine residue binding activity. Is expressed in several structures, including blood vessel; hindbrain; lateral line primordium; post-vent region; and vascular cord. Orthologous to human SHE (Src homology 2 domain containing E).

Ensembl:

ensembl_id ENSDARG00000087956

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019697 False 1830 mRNA 0.49 6 22587661 22603190
TCONS_00019698 True 1693 mRNA 0.50 7 22587733 22603354

Neighbor

gene id symbol gene type direction distance location
XLOC_009872 NA coding upstream 8335 22575143 ~ 22579326 (+)
XLOC_009871 C16H1orf43 coding upstream 226442 22345513 ~ 22361219 (+)
XLOC_009870 NA coding upstream 258633 22327970 ~ 22329028 (+)
XLOC_009869 NA coding upstream 260159 22323766 ~ 22327502 (+)
XLOC_009868 NA coding upstream 473725 22022291 ~ 22113936 (+)
XLOC_009874 chrnb2 coding downstream 15266 22618620 ~ 22678294 (+)
XLOC_009875 NA coding downstream 91872 22695226 ~ 22696496 (+)
XLOC_009876 CR854942.1 coding downstream 158492 22761846 ~ 22790881 (+)
XLOC_009877 flad1 coding downstream 260959 22864313 ~ 22881338 (+)
XLOC_009878 efna3b coding downstream 483972 23087326 ~ 23189883 (+)
XLOC_009866 NA non-coding upstream 710240 21874395 ~ 21877421 (+)
XLOC_009889 CR533578.1 non-coding downstream 1003877 23607231 ~ 23607352 (+)
XLOC_009902 NA non-coding downstream 1415754 24019108 ~ 24028618 (+)
XLOC_009903 NA non-coding downstream 1595125 24198479 ~ 24207903 (+)
XLOC_009904 CT867948.1 non-coding downstream 1912738 24516092 ~ 24524076 (+)

Expression


Co-expression Network