CI01000054_07390631_07391977 (MRPL53)


Basic Information

Item Value
gene id CI01000054_07390631_07391977
gene name MRPL53
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7390586 ~ 7393103 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_07390631_07391977.mRNA
ATTTGAACTCTTGCATAATTCTGTTCTTATAACATCTCAAATTTAGAGACTGTACAAAATGTCACAATGGGAGTATGGTCTTTATAAAGCAGTTATTGATGACACATAATTGCAAAAAGCTGTGGAAAGTTATGAAAACCATCTTGATACTACATTATGACAAAAGTGTTTGGCTGGTTATTGGCACAATATGACATAATCAACATGATTTCTTGTTGAAAGTGCATTTAAAACCAATTAAAGTTGAGGCCTGTACGACAGATTATGCACGGGGGTGTGAAGGAAGATACGGCAAGATGAATCTGTGAAAATGAACTGAATGAACTCAACGTAAAATGATGTGGAAGGTAAACAGTAAGAATACTCTATCCACTTGCGCCATCTACTGGATGTGTTTCGAGTTTTGTCAATAAAATGCAACTGTTTTATTTCAGTACAATTTCAGATAAAATAATTAAAGCAGTTTAATGCATTTTATGCAACGGACACAGCTGCTTAGAAGAAAAGTACAGTTATAAGATGTTATATTGACGGAAAATTATATTTTATCATTAAAATATTTTTTAGAAATATTAATATAAGATAGGAATTTAAATGAATGAATGAATAAATATGGACATTTAATATAAATAATATCAAATATGACATACAATACCTAAGAAAAGTATATATATATTATATGAAAGCATATAGGCTCATAATCCTTTTGAGATAGAATATAGTTTGGAAATTCTGCATGACAAAAAACAAAAAACAAAAAAACAATTCCCTTCCCTTTAAAACAATGCCTTTTTCATATTTTATATTGCATATTTTAAATATCGCATTTGTAATGCATTTTTTCAATTGAACTTTCAAAATTACAAAATTCAATAAGTTCTCGAGACATTTCACAATTTTCATATTTAGCAAGCACAACTGGAAACAGCCTGCAGCAATTAAGTAAAATTAAATTAAATTAAAATAATATTGAAATTAAAGGGCTTCACAAACATATATTAAATTCATTTAACAGAGACAGTTATTTGGGCTTTTTGATTTAAAAAAAAAAAAAAAAAAATCATATTTTGTGTTGACGAGCCCGACTGCATACGTCATCAGCAGGTGAAAGGTCATGTAGAGAAAGATGGCGGCGTCCAGGGGAGCAGTAGTGTTAAAGACGGTTAAAAAAATTATTGTACAGTTTTGCCCCTTTGAATCTAATGTTCGCTCCACAAGAGAGTTTCTCATCATGGTCGGGTCCGAAAAAGTCAGAGGCACAAATATGAACTGTGAAGTTATCACAGAAGTAAAGCACGACCGATCAGAGCCTACGATTGACATCACATTCTTGGATGGAGAGAGGCTGGTGATGAAGGGATCCAAATTAACCACCCAAGAAATGCTCTCAGCCTTACAGACCCGCTGCAGTGCTAAAGATCCTCAGGCTAAAGCAGGAGACAAGAAGTAGTGTATTCTGTATTATGTATTTATATGTGCGTGGATGTGTAATAAA

Function

symbol description
mrpl53 Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL53 (mitochondrial ribosomal protein L53).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_07390631_07391977.mRNA True 1495 mRNA 0.32 3 7390586 7393103

Neighbor

gene id symbol gene type direction distance location
CI01000054_07385840_07388475 PMP2, FABP11A, FABPH coding downstream 1169 7385792 ~ 7389417 (-)
CI01000054_07368294_07372480 FAM8A1A coding downstream 16787 7368092 ~ 7373799 (-)
CI01000054_07311700_07314853 NA coding downstream 73412 7311540 ~ 7317174 (-)
CI01000054_07228008_07231489 ATXN1A, ATXN1 coding downstream 159097 7227594 ~ 7231489 (-)
CI01000054_07165957_07169539 HEYL coding downstream 221047 7165435 ~ 7169539 (-)
CI01000054_07398765_07399272 NA coding upstream 5451 7398554 ~ 7400054 (-)
CI01000054_07418471_07418846 NA coding upstream 25064 7418167 ~ 7418853 (-)
CI01000054_07516390_07526784 TPD52 coding upstream 123064 7516167 ~ 7527449 (-)
CI01000054_07607425_07611037 STMN2A, STMN2B, STMN2 coding upstream 213397 7606500 ~ 7611037 (-)
CI01000054_07642350_07658894 NA coding upstream 248697 7641800 ~ 7660515 (-)
G233922 NA non-coding downstream 52470 7337904 ~ 7338116 (-)
G233904 NA non-coding downstream 163741 7220031 ~ 7226845 (-)
G233915 NA non-coding downstream 184406 7205908 ~ 7206180 (-)
G233907 NA non-coding downstream 191629 7192999 ~ 7198957 (-)
G233899 NA non-coding downstream 208466 7181769 ~ 7182120 (-)
G233942 NA non-coding upstream 115265 7508368 ~ 7509658 (-)
G234023 NA non-coding upstream 173136 7566239 ~ 7566525 (-)
G234024 NA non-coding upstream 173853 7566956 ~ 7567186 (-)
G234025 NA non-coding upstream 174131 7567234 ~ 7567509 (-)
G234042 NA non-coding upstream 236474 7629577 ~ 7630828 (-)
CI01000054_06629482_06641861 TRIQK other downstream 736573 6628082 ~ 6642160 (-)
G232274 NA other downstream 2181346 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 2718353 4670151 ~ 4681361 (-)
G231645 NA other downstream 3407763 3981847 ~ 3982823 (-)
G235216 NA other upstream 1854936 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 2090044 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 2470218 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 3410768 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 3478001 10871104 ~ 10881495 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014152 mrpl53 coding NC_007130.7 CM002903.2 32158010 ~ 32164532 (+)