CI01000054_07516390_07526784 (TPD52)


Basic Information

Item Value
gene id CI01000054_07516390_07526784
gene name TPD52
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7516167 ~ 7527449 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_07516390_07526784.mRNA
AGCATGGTTGAATATGTTTGCAGTATAATGGTGCCGAAGACTCATGAGTGTGTGTTAGCCTTTAGGGATCAGCACTTCTGAATGTCTTGCGCTTGGCTGAATCCATTTCAGTCTGTAATGGTTTGTGCAGCTGGTGTGTATCTGAAGCAGTGCGGCGGCCCATTGTAATGGATTAGTGCTGTAATCTGGGCCACCACAGATTACAGCTTCCTTTCGTGGGCTTGCCCCAGTGTCATGTGACCAGAGGACAAATGGATCTTCATTTCCTATGGATGAAAAGATAGATGGAGGGGGCTGAGCATGAGACAGCTGAGTACAGGAACAGCTAAAGACGATGGCGATTGCTTTTCTCAGACCTTGAGAATCTGGCACTTTTACAGGATTGTCAACAATCCCTATAAGGACCGTTGAGATTACAGCTGGGAGTGTCGGCTCGTGACGGAATTAGATCGCTCTCGAGAGGTAACTTATTAACGTGCTGCCGTCGTTGTCTTGGGCCGGACATCATGTGAGCCAGCAGCTGCCCTGCTAGCGCTGCAGGATCCGCAAAACACACTTATACTCACAACCGTAGCTAGCAGATAGGACAATCGGCACAGTGATCCTAACACACTCTGTCACATGAAATCACTTAGTGTCCAGGGAGCTTCCTGTTCATGGGCAGCATGGAGGAACCTGTCGAGGAGTACAAGTCTCCGTTCAACTTTGAGCAGGGAGTGAACACCAGCTACCTCTACCTGTCACCCAAAGAGAGTTTAACTCCCCCTGGCTCACCCGTACCATCGCTCAGAGGGACCCAGGAGCCAGACTTCATCCCAGAAGTAGGCGAAGATGCAGTGGATGCAGTACCCTGTTCACCCTGCATGGCTCTAACTGAGAAAGAGCAAGCAGAGCTCTGCAGTGAACTATCTAAGGTGGAAGATGAGATACAGACTCTTTCTCAGGTGCTAGCGGCCAAGGAGAAGCAGGTGGCGGAGATCAAGAGGAAGCTGGGCATCACTCCACTCAACGAGTTTAAACAGAACCTAACCAGGGGCTGGCAGGAAGTCACCACCTCCACTGCGTATAAGAAGACCTCAGAGACCCTATCCCAAGTGGGTCAGAAGGCAACGACAGCATTCTCCAGCGTGGGCTCAGCCATTAGCAGAAAGCTGGAGGACGTAAGGAACACACCCACCTTCAAGTCATTTGAGGAGAAAGTGGAAACCTTAAAGACTAAGATAAGCCCGACACCATCGACAGGAGATATTGAAGAGGTTTCAGACTCCACACCTGACGGAGAGCCAGTGGTTAAACAGCCGGAGGGAACGTTTCCACCAGATCAACAAACACACTGAGGATCCACCTTCAAACGCTTCTTTCTTTTTACCTCCTGTTCTCCTTCCACTTCACAGCGGTACTTTTGCATAGTTACAGTGAGCTTTGCTTTGTGGCCACTTTTGTCTACCGGAGTCTGGTTTATCTCCAGACGGGACGTGGTAGTCCTACACTGGAGCAGATGTATCAGAATGTGAGATGTATGTTCAGGCTGTCCTTCAAAGGTCCCTTTTGAAGAAAAAA

Function

symbol description
tpd52 Predicted to be involved in B cell differentiation. Predicted to be active in cytoplasm. Orthologous to human TPD52 (tumor protein D52).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_07516390_07526784.mRNA True 1560 mRNA 0.50 6 7516167 7527449

Neighbor

gene id symbol gene type direction distance location
CI01000054_07418471_07418846 NA coding downstream 97314 7418167 ~ 7418853 (-)
CI01000054_07398765_07399272 NA coding downstream 116113 7398554 ~ 7400054 (-)
CI01000054_07390631_07391977 MRPL53 coding downstream 123064 7390586 ~ 7393103 (-)
CI01000054_07385840_07388475 PMP2, FABP11A, FABPH coding downstream 126750 7385792 ~ 7389417 (-)
CI01000054_07368294_07372480 FAM8A1A coding downstream 142368 7368092 ~ 7373799 (-)
CI01000054_07607425_07611037 STMN2A, STMN2B, STMN2 coding upstream 79051 7606500 ~ 7611037 (-)
CI01000054_07642350_07658894 NA coding upstream 114351 7641800 ~ 7660515 (-)
CI01000054_07712126_07718933 GMNN coding upstream 184586 7712035 ~ 7718933 (-)
CI01000054_07723457_07725732 ACOT13 coding upstream 195959 7723408 ~ 7725732 (-)
CI01000054_07737375_07747797 TMEM64 coding upstream 209805 7737254 ~ 7747797 (-)
G233942 NA non-coding downstream 6509 7508368 ~ 7509658 (-)
G233922 NA non-coding downstream 178051 7337904 ~ 7338116 (-)
G233904 NA non-coding downstream 289322 7220031 ~ 7226845 (-)
G233915 NA non-coding downstream 309987 7205908 ~ 7206180 (-)
G233907 NA non-coding downstream 317210 7192999 ~ 7198957 (-)
G234023 NA non-coding upstream 38790 7566239 ~ 7566525 (-)
G234024 NA non-coding upstream 39507 7566956 ~ 7567186 (-)
G234025 NA non-coding upstream 39785 7567234 ~ 7567509 (-)
G234042 NA non-coding upstream 102128 7629577 ~ 7630828 (-)
G234039 NA non-coding upstream 105553 7633002 ~ 7634751 (-)
CI01000054_07165957_07169539 HEYL other downstream 344494 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 862154 6628082 ~ 6642160 (-)
G232274 NA other downstream 2306927 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 2843934 4670151 ~ 4681361 (-)
G231645 NA other downstream 3533344 3981847 ~ 3982823 (-)
G235216 NA other upstream 1720590 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 1955698 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 2335872 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 3276422 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 3343655 10871104 ~ 10881495 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00021793 NA coding CM030130.1 CM030130.1 30142222 ~ 30158707 (-)