CI01000054_07582152_07584554


Basic Information

Item Value
gene id CI01000054_07582152_07584554
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7581980 ~ 7584692 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_07582152_07584554.mRNA
CTAGAAAAACACAGGTCGCCTTGACATAGATGTAGCACTCTTGGAGGAATTGTTGGCTATGTATTCTTCTCATTCAGAGCTGCTTTACTGCAAACAATGACTCAAAGGTTTATGTGTCAGGCATTACGAACCATTGTAAGGAGTGAATGAGTCTGTTCCTAGTCTGGCAATCATGCGGTCTGATGCAATGGGAGAGGCAAGTTCTGTCAGGCAGGTCCGGACCTCCCGGCGCCTGGCCCGTCACACTGCCCAGGGGAAAACGGACAACTTGGCTTTGACCGACAAACTGAGCTCTAAGGAGAAGAGAAGCACAGTCCACTTAACTATTGACACACAGTATGTGCTGAACTCCAGTGATCTCTTTCTTGTTTTTCCTGTGTCTTCCGAGTATTACCGCACAGCTCAACCATGTGCAAGAACAGCTGGATCCTGCTGTGGCCAACGGCTGCTCTCCTTTATTACGGCAGGGGAAGTGACATCAGTAGCCCAAGACAACAATAAAGGAGACGAAATCACAACAGCCGACTTGTGGGACACATCAGTACTCTGATTTTTTTTCATCTGAACTCCAAACACACCCAGCAATTGCAGCTTCAGAGAATGTCATTAATCCAAGAACATATGCATTTGGAAAATATGATGTGTTTCGCGTCTAGAAATGACGTTTGTAGACGTGCTCAAGAGAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_07582152_07584554.mRNA True 688 mRNA 0.46 2 7581980 7584692

Neighbor

gene id symbol gene type direction distance location
CI01000054_07539134_07556858 ZBTB10 coding upstream 23585 7539134 ~ 7558395 (+)
CI01000054_07454627_07503082 ZNF704 coding upstream 78898 7454627 ~ 7503082 (+)
CI01000054_07438245_07449632 PAG1 coding upstream 132268 7437432 ~ 7449712 (+)
CI01000054_07271120_07280248 NA coding upstream 301615 7270906 ~ 7280365 (+)
CI01000054_07252016_07252204 NA coding upstream 329563 7251801 ~ 7252417 (+)
CI01000054_07599184_07601743 HEY1 coding downstream 13214 7597906 ~ 7603125 (+)
CI01000054_07620269_07633084 NA coding downstream 34045 7618737 ~ 7633111 (+)
CI01000054_07675827_07711906 FAM65B coding downstream 91135 7675827 ~ 7711982 (+)
CI01000054_07719547_07722201 C11H6ORF62, CUNH6ORF62, C3H6ORF62, CLG10H6ORF62, C12H6ORF62, C23H6ORF62, C6H6ORF62, C18H6ORF62, CLG22H6ORF62, C6ORF62, CSGR19H6ORF62, C4H6ORF62, C24H6ORF62, C2H6ORF62, CLG11H6ORF62, C16H6ORF62, BC005537 coding downstream 134805 7719497 ~ 7722271 (+)
CI01000054_07726558_07730944 TDP2B, TDP2 coding downstream 141866 7726558 ~ 7731011 (+)
G233018 NA non-coding upstream 65374 7514404 ~ 7516606 (+)
G233017 NA non-coding upstream 68280 7508766 ~ 7513700 (+)
G233065 NA non-coding upstream 160623 7420428 ~ 7421357 (+)
G233053 NA non-coding upstream 191086 7390578 ~ 7390894 (+)
G233051 NA non-coding upstream 192403 7389362 ~ 7389577 (+)
G233096 NA non-coding downstream 147163 7731855 ~ 7732104 (+)
G233025 NA non-coding downstream 150129 7734821 ~ 7736502 (+)
G233030 NA non-coding downstream 201385 7786077 ~ 7812277 (+)
G233026 NA non-coding downstream 206338 7791030 ~ 7793543 (+)
G233123 NA non-coding downstream 244578 7829270 ~ 7829472 (+)
G232870 NA other upstream 693477 6887912 ~ 6888503 (+)
G232659 NA other upstream 1206086 6374850 ~ 6375894 (+)
CI01000054_06305908_06312122 NA other upstream 1275120 6305908 ~ 6312163 (+)
G232558 NA other upstream 1540117 5993660 ~ 6041863 (+)
CI01000054_05608892_05634793 RNF19B other upstream 1957305 5608457 ~ 5634804 (+)
G233306 NA other downstream 719907 8304599 ~ 8304949 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other downstream 721245 8325126 ~ 8329716 (+)
G235560 NA other downstream 2803444 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 3980284 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 4048284 11632959 ~ 11635103 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014146 NA non-coding NC_007130.7 CM002903.2 31800505 ~ 31859540 (+)