CI01000054_07607425_07611037 (STMN2A, STMN2B, STMN2)


Basic Information

Item Value
gene id CI01000054_07607425_07611037
gene name STMN2A, STMN2B, STMN2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7606500 ~ 7611037 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_07607425_07611037.mRNA
TTTTCGCAATCCTCTGTTTGTGATTAATAAGCTCGTCAGGGAGTGTGAGGGAGTTGATCAGATTTTTCTAGACTCCTCAGGGTGTGAAGAAACATACAAAGAGAAGATGAAGGAGCTCTCCCTTGTCTCCCTCATCTGCTCCTGTCTCTACCCAGAGGCACGCAAAAACCTCATGGGCGAGTTTGAAGACATGGAGGTTAAGCCCATTAACAAGCGGGCTTCTGGCCAGGCCTTTGAGGTCATCCTGAAGCCACCTTCTCCCACGGCTGATGGGGGCTACAGCATCACTTCACCTCCTAAAAAGAGGGACATGTCTCTGGAGGACATCCAGAAGAAGCTGGAGGCTGCAGAGGACAGGAGGAGATCCCAGGAGGCTCAAATCCTGAGGGCCCTGGCTGAGAAACGTGAACATGAGCGGGACGTCCTGCTGAAAGCCATGGAGGAGAACAGCAACTTCAGCAGGATGGCAGAGGAGAAACTCATCATGAAGATGGAGCAGATCAAGGAGAACCGTGAAGCCCACCTTGCAGCCATGCTGGAACGGCTGCATGAGAAGGAGAGGCACGCTCAGGTGGTGCGCAGAAACAAAGAGCTGAGGGAAGAGCTGACAGCATGAGCACATCTCTGTACACCCACCGTCCCATCACCCCACCCCCTCTCCCCATACCTGCGACCTCCCGTCCCCAGAGAGACCCCCTCTCACCCTGCCACCGCAGCCCTGAGTAGAAAAGAGCCTCTGGCGCACCACCCCCCTGCCCCGCCCCGCCCAGGCCAAAAGAATCGACCCTGCCCCCCTCACCAACAGCATCCTGCCCGATATAGTCCATAAGAGAAAAGGAACACCATTAATCAAGAAAAAAAAATGTTTTTGATCAATTTGAAACCAGTCAAAGTGGGTGTGGTTTTTTTTGTAAATACTTCCTATTTGTTTTATATGAGATGATGAAAAGTATTGCGGTGTGCCATTTTATAAGTTTCTCTCTCTGTATCTTTATCTTTTAGTGGATGTACTTGTTTCCTCCCTCTCTCTCTCTCAGATCTGCTACAGTTTCTCTTGTACCAGGCTTTGGTGTTTGTGAGTTTGCTGGCTAGCTGACATTTGCAATGTCTTCTCTAAACGCAATGATCATGTTAGTGTCTCTATGTCCATGTGAAGAGAGTAAAAGCCGCCACACTACAGTACACACAGCTCTAACCGGTCACTAACATAGCATTTACAACAATCTCTAGCTCTTTCTTCATACATTCATCTGGTATATAGTCACAACACACAGACACACACACACACACACACATACTTATATGCCCCTGGTCAGCATGATTTAGTAAAAAATGTCATGTTGCCCAAGAGGAACTGCTGTTTGTGCCACGCCGAAGTCATGTGACGTCTCTTGACCTGTGTTTGACCATAGTCTGGGTTGCATTTATGCTCACAGCATAACATCAAGTTAACCTTGAGTTCTTGAGAATCACGTGTACTGAAGTTCTCCAATTCTAATTGTTGATTTTCAGGTTTTTGGAGGTCAATATCTGGTAATAAA

Function

symbol description
stmn2a Predicted to enable tubulin binding activity. Acts upstream of or within nervous system development. Predicted to be active in cytoplasm and growth cone. Is expressed in gut; head; nervous system; spinal cord neural tube; and trigeminal placode. Orthologous to human STMN2 (stathmin 2).
stmn2b Predicted to enable tubulin binding activity. Acts upstream of or within nervous system development. Predicted to be active in cytoplasm and growth cone. Is expressed in several structures, including basal plate midbrain region; nervous system; pronephric duct; spinal cord neural tube; and trigeminal placode. Orthologous to human STMN2 (stathmin 2).
stmn2 Enables calcium-dependent protein binding activity. Involved in cellular response to nerve growth factor stimulus; regulation of microtubule polymerization or depolymerization; and regulation of neuron projection development. Located in several cellular components, including growth cone; lamellipodium; and neuronal cell body.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_07607425_07611037.mRNA True 1541 mRNA 0.48 5 7606500 7611037

Neighbor

gene id symbol gene type direction distance location
CI01000054_07516390_07526784 TPD52 coding downstream 79051 7516167 ~ 7527449 (-)
CI01000054_07418471_07418846 NA coding downstream 187647 7418167 ~ 7418853 (-)
CI01000054_07398765_07399272 NA coding downstream 206446 7398554 ~ 7400054 (-)
CI01000054_07390631_07391977 MRPL53 coding downstream 213397 7390586 ~ 7393103 (-)
CI01000054_07385840_07388475 PMP2, FABP11A, FABPH coding downstream 217083 7385792 ~ 7389417 (-)
CI01000054_07642350_07658894 NA coding upstream 30763 7641800 ~ 7660515 (-)
CI01000054_07712126_07718933 GMNN coding upstream 100998 7712035 ~ 7718933 (-)
CI01000054_07723457_07725732 ACOT13 coding upstream 112371 7723408 ~ 7725732 (-)
CI01000054_07737375_07747797 TMEM64 coding upstream 126217 7737254 ~ 7747797 (-)
CI01000054_07793409_07805739 TMEM55A coding upstream 182162 7793199 ~ 7805739 (-)
G234025 NA non-coding downstream 38991 7567234 ~ 7567509 (-)
G234024 NA non-coding downstream 39314 7566956 ~ 7567186 (-)
G234023 NA non-coding downstream 39975 7566239 ~ 7566525 (-)
G233942 NA non-coding downstream 96842 7508368 ~ 7509658 (-)
G233922 NA non-coding downstream 268384 7337904 ~ 7338116 (-)
G234042 NA non-coding upstream 18540 7629577 ~ 7630828 (-)
G234039 NA non-coding upstream 21965 7633002 ~ 7634751 (-)
G234057 NA non-coding upstream 26465 7637502 ~ 7637975 (-)
G234071 NA non-coding upstream 89838 7700875 ~ 7704166 (-)
G234097 NA non-coding upstream 95059 7706096 ~ 7707359 (-)
CI01000054_07165957_07169539 HEYL other downstream 434827 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 952487 6628082 ~ 6642160 (-)
G232274 NA other downstream 2397260 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 2934267 4670151 ~ 4681361 (-)
G231645 NA other downstream 3623677 3981847 ~ 3982823 (-)
G235216 NA other upstream 1637002 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 1872110 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 2252284 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 3192834 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 3260067 10871104 ~ 10881495 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014145 stmn2b coding NC_007130.7 CM002903.2 31771270 ~ 31790551 (+)
bowfin (Amia calva) AMCG00021796 LOC105009370,LOC106588819,LOC100696657,LOC107596629,LOC102210154,LOC107685565 coding CM030130.1 CM030130.1 30256031 ~ 30265454 (-)