CI01000054_07642350_07658894


Basic Information

Item Value
gene id CI01000054_07642350_07658894
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7641800 ~ 7660515 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_07642350_07658894.mRNA
AAACTCAGCCATGCTGTTTCTACAGTTCAAACACTTCAGGGAAAAGACAAAGACCTAATCGTAACTTACAGTCAGAGATTGAGTGAAATAAACCACTTTCATGCTATATTCTTTCTCTCTCTATTCTCATGCAGCCGTTCCTGCTCTTTCTCATACTGAGGCAGCAGGGTTTCTGCAGAAACAGCAGTTAAATCTGATCATTCAGTTCTTCTGAACTTAGATGGAGATGACAACATTTCTAAGACAGCATATCACAGACAAAGCACTATAGACATCTGCTAGAAACAGGCTTTAAAAGGACAACTTTACCAGTGAAGTCATGTTTATATGGGATGTTCAATGAGGTAACAAGTTAGATATTTCACAGCCATTGATGCCAATGTAAACACTTCATACACAGAATAAGCAACAAAACTTGAATGATCTTGGGAATGATGTATTATGTTTATTCCTCAAAAGGTGCCTTAAGTGTCCATAATGAACTTTTGAAAAATACATCTGGAGAGTGAATAATTTAGTCCACTAATGGTGTCCCAAAACCCAAAATTATTTAAGTTCTCCCACTACACAATACCTTTCAAAAGTTTGGGATCAGTAAGATTAAATAATAAAGGATGCATTAAACTGATTAAAAGTGACAGTAAAAGCATTTATGAAAGGTTTACAAAAGATTTATATTTTAAATAAATGCTGTTCTTTTGAATTTCTATTTGTCAGAGAATGTATCACGATTTCCACAAAAATATTAAGGAGCACAACTGTTTTCAGCATTGATAATAAGAAATGTTTCTTGAGCAGCAAATCAGCATATTAGACTTCATAGACTTCCGTGAACGAGCGCCATATGTAGAATTTTAAACCTACAAGTAAGTGTATTTTTTATGATAGCAGTAACTAATATATATATATATATATATATATATACACACACACTTCTGCTTTAAAATGCATTATTTTTATTTTTGGATTGTAATGTTTGTTACAATGTTAGAATGTAAAGTAACTTTTTTTTTTGCACATACTGTAGGCCTATTAGTGTGCCAGACTACATTCACTATATTTGTATTAATAGCTTTCAATATAAACACTGTTTGTAGGACAACATTAGGCAGGATGTTAAATTAAGATTTTTAAAAAGTAAATACAGATTTTTTTTTTCTAAATCCAAATAGAAAAACGCAGAAAATACTTAGATATATACCATCGCCATTTAGCCAAAAAATACAGAGATATGACTTTTTGGCCATATCGCCCAGCCCTACCATCACATGATAAAATTACATTTCAAAATATATCTCAAAAACATTAAATTCTTACCAACCCCAAACGTTTGTGTGTGTGCAGCATGTGGAGCTTTTCTTGCTTGAACACAAATCATAGTAGTTGTACTGCTTTTTAGCAATATTTCTAATGCTCGAGCACTATAGAGAAATTCACATTATATTCATCTGCTTGAAATGCCATTAACAGAAAAACAGAAGTCATTACATTCTCATATCATTACATTTTGTTTGTGCTGCTCCAAAAGTCATCTACACGTAACCATACAGTAAATTCTCTTCAGAATGTTTTTAAAATTCTTACAGTATGTTAATTTATGCAAATTTCATAAACAGGGGAAATGTATGCCTTCCAGAACATCGACCAGCATCCTGTTCCTCCGCTCAAACAGCAGATATCACTCACATGCGAATGTAAAGCCCACTGTCAGCTTGAGCCTGAGCAGAGAGGCGAGAGGCAGTGGACCGCTCTGAGCATCTACTCACTGCACCAAGTCGAGTGTAAAGTCAGACAGCAGACAGCTCTTGTCCCAGAGACACCACAGGCTGTGATACAGCCTAGAGCTCTGGGGTCCTTCACCACCCCTCAGACACCTTCAAACCCCTCATGTGGAGAGGATCGAGTCCTCACTCCCCACGCCGTGCTCCCTTTTGTCTCGCTGGTACAAACACCTCTCCAGCATGTCTACATTCCACGGCGGGCCTTCAGCTTCTTCTCAGACACAAAGGGAATACAGACGCACTGCAGCGACACAGTGGAATTGCCAATTATTTTAAGACTTGTTGTAGAGCTTCCATCCATCAGTTTTGGACAAGCACTTCAATATCACCAAAACTTTTAGGCCCATAACATTCTACTAAATCAAATGCTACACAAACTCGGTTTTATGTGTCATTATCTATGTTTCCATCCACCTATTTTTATTCAAATTTGGGATATCGCATTAATAGAAACACCAAGAGGAGCATAAATTCTAAAAATGTTCATTAAAAACATGCTATTAAGATAACATGATAGCATTTCTTGCATTTTGTCTGCATGCTTTGAAGCTCAAGTAATTTATGGTGTACGAAAAAAAAGAGCCACGGTGGATTTCCAGATTGCAGCTTCCATTTTTGTTCTCTTTTAAAAATTATTCTCATTGCTTCATAAAATTAAATTTGAACCACTGCAGTCACGTTGACTGTTTGAATGATGTCTTTACTACCTTTCTGGACCTTGAAAATGGTGATTATATTGCTGTCTATGGAGGGGTCAGAGAGCTCTCGGATTTCATCAAAAATATCTTAATTTGTGTTCCGAAGATGAAGGTCTTACGGGTGTGGAACGACATGAGGGTGAGAAATTAATGACAGAATTTTTGGGTGAACTAACCCTTTAAACCGAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_07642350_07658894.mRNA True 2672 mRNA 0.36 4 7641800 7660515

Neighbor

gene id symbol gene type direction distance location
CI01000054_07607425_07611037 STMN2A, STMN2B, STMN2 coding downstream 30763 7606500 ~ 7611037 (-)
CI01000054_07516390_07526784 TPD52 coding downstream 114351 7516167 ~ 7527449 (-)
CI01000054_07418471_07418846 NA coding downstream 222947 7418167 ~ 7418853 (-)
CI01000054_07398765_07399272 NA coding downstream 241746 7398554 ~ 7400054 (-)
CI01000054_07390631_07391977 MRPL53 coding downstream 248697 7390586 ~ 7393103 (-)
CI01000054_07712126_07718933 GMNN coding upstream 51520 7712035 ~ 7718933 (-)
CI01000054_07723457_07725732 ACOT13 coding upstream 62893 7723408 ~ 7725732 (-)
CI01000054_07737375_07747797 TMEM64 coding upstream 76739 7737254 ~ 7747797 (-)
CI01000054_07793409_07805739 TMEM55A coding upstream 132684 7793199 ~ 7805739 (-)
CI01000054_07874540_07894985 NA coding upstream 213729 7874244 ~ 7895322 (-)
G234057 NA non-coding downstream 3825 7637502 ~ 7637975 (-)
G234039 NA non-coding downstream 7049 7633002 ~ 7634751 (-)
G234042 NA non-coding downstream 10972 7629577 ~ 7630828 (-)
G234025 NA non-coding downstream 74291 7567234 ~ 7567509 (-)
G234024 NA non-coding downstream 74614 7566956 ~ 7567186 (-)
G234071 NA non-coding upstream 40360 7700875 ~ 7704166 (-)
G234097 NA non-coding upstream 45581 7706096 ~ 7707359 (-)
G234066 NA non-coding upstream 74140 7734655 ~ 7736512 (-)
G234101 NA non-coding upstream 90690 7751205 ~ 7751415 (-)
G234120 NA non-coding upstream 155716 7816231 ~ 7818263 (-)
CI01000054_07165957_07169539 HEYL other downstream 470127 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 987787 6628082 ~ 6642160 (-)
G232274 NA other downstream 2432560 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 2969567 4670151 ~ 4681361 (-)
G231645 NA other downstream 3658977 3981847 ~ 3982823 (-)
G235216 NA other upstream 1587524 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 1822632 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 2202806 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 3143356 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 3210589 10871104 ~ 10881495 (-)

Expression


Co-expression Network