CI01000054_07726558_07730944 (TDP2B, TDP2)


Basic Information

Item Value
gene id CI01000054_07726558_07730944
gene name TDP2B, TDP2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7726558 ~ 7731011 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_07726558_07730944.mRNA
ATGTCCAGCACTGTAATGTCAGGTAACCACAAAGATCAACAAATGTCTGCTTTAGAGGAAACGAGGACGAGTCTTTGCGATGAGTTTGCCTCTATCTCTGGATCGGATAGTGCCGTGGCCCAGTGTTATTTAGCAGAAAATGAATGGGATATGGAGAGAGCATTGAACTCTTTCTTTGAAGCTCATATGGATTCAGTCTTTGATGTTGAAGACGCAGAGGAAACTAAAGATGTGTCTGGGACTAAGAGAAAGGGGGTGAGCTCTTCTGACACTGCTGATACTTCAGGAACAAAGAAGAAATTTAAGACGGACAAGGTGGATTGCATTGACTTGACAGCAGAGGAACCCACTTGCTCCAGCAGTGTGACTGTGAATGTGAATAAAAGTCAGGCTGAAAGTGCCGTAAACGAATCTGATGCTGAGGACAGCAAGCTCTCAATCATCAGCTGGAATGTGGATGGTTTGGACACATTAAGTCTTGCAGAGCGTGCCCGGGGCTTGTGCTCATATCTAGTTCTATATACACCAGATGTGGTTTTTCTTCAAGAACTCATTCCAACTTATATTCAGTATCTTAAGAAACGTGCTGTCAGCTACCTGTTTGTTGAAGGGAGCGATGATGGTTACTTCACGGCAATAATGTTGAAGAAATCAAGAGTAAAACTTTTGGAAAGTGAGATCATCTGTTATCCTACAACACAAATGTTGAGAAATCTGTTAGTTGCTCAGGTGACTTTCTCAGGTCAAAAGCTGTACTTGATGACATCACATTTAGAGAGCTGTAAGAACCAATCAGAGGAGAGAATGAAACAACTGCGGGTCATACTTCAAAAGATGAAGGAAGCACCAGAAGATGCCACTGTCATTTTTGCTGGAGACACCAATCTCAGAGACACTGAGGTGGTAAAGGTTGGAGGTTTGCCACCAGGTGTGTGCGACGTGTGGGAACAGCTGGGCAAACAGGAACACTGCCGATACACTTGGGACACCAAAGCAAACAGCAATAAGACTGTGCCTTACATCAGCAGATGTCGCTTTGACCGCATCTTCCTTAGGTCTGCTAAAACTGGCCCAGGAGTCACTCCTGACCACATGGTCTTGGTTGGAATGGAGAAACTAGACTGTGGCCGTTATACAAGTGATCACTGGGGAATTTACTGCACTTTCAACACATGATCATTAAATACCAAAATGACCAGATGTCTTCCATATAGAAGATGTTTGGTTTTAAAGAGCGTTTGTA

Function

symbol description
tdp2b Enables DNA binding activity and tyrosyl-DNA phosphodiesterase activity. Acts upstream of or within convergent extension involved in gastrulation; determination of left/right symmetry; and negative regulation of transforming growth factor beta receptor signaling pathway. Predicted to be located in nucleus. Predicted to be active in PML body and cytoplasm. Is expressed in Kupffer's vesicle; forerunner cell group; and tail bud. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 23. Orthologous to human TDP2 (tyrosyl-DNA phosphodiesterase 2).
tdp2 Enables metal ion binding activity; phosphoric diester hydrolase activity; and single-stranded DNA binding activity. Involved in double-strand break repair and neuron development. Located in PML body; aggresome; and cytoplasm. Implicated in autosomal recessive spinocerebellar ataxia 23.

NR:

description
Ttrap protein, partial

GO:

id name namespace
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K19619 TDP2; tyrosyl-DNA phosphodiesterase 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_07726558_07730944.mRNA True 1243 mRNA 0.44 7 7726558 7731011

Neighbor

gene id symbol gene type direction distance location
CI01000054_07719547_07722201 C11H6ORF62, CUNH6ORF62, C3H6ORF62, CLG10H6ORF62, C12H6ORF62, C23H6ORF62, C6H6ORF62, C18H6ORF62, CLG22H6ORF62, C6ORF62, CSGR19H6ORF62, C4H6ORF62, C24H6ORF62, C2H6ORF62, CLG11H6ORF62, C16H6ORF62, BC005537 coding upstream 4287 7719497 ~ 7722271 (+)
CI01000054_07675827_07711906 FAM65B coding upstream 14576 7675827 ~ 7711982 (+)
CI01000054_07620269_07633084 NA coding upstream 93447 7618737 ~ 7633111 (+)
CI01000054_07599184_07601743 HEY1 coding upstream 123433 7597906 ~ 7603125 (+)
CI01000054_07582152_07584554 NA coding upstream 141866 7581980 ~ 7584692 (+)
CI01000054_07755766_07787767 NA coding downstream 24755 7755766 ~ 7788110 (+)
CI01000054_07816225_07819805 TMEM106B, T106B, TMEM106BB coding downstream 85214 7816225 ~ 7820975 (+)
CI01000054_07836152_07845992 SCIN coding downstream 104593 7835604 ~ 7846232 (+)
CI01000054_07852818_07853423 ARL4AB, ARL4A coding downstream 121390 7852401 ~ 7854477 (+)
CI01000054_07997892_08012569 BZW2 coding downstream 266881 7997892 ~ 8012883 (+)
G233018 NA non-coding upstream 209952 7514404 ~ 7516606 (+)
G233017 NA non-coding upstream 212858 7508766 ~ 7513700 (+)
G233065 NA non-coding upstream 305201 7420428 ~ 7421357 (+)
G233053 NA non-coding upstream 335664 7390578 ~ 7390894 (+)
G233051 NA non-coding upstream 336981 7389362 ~ 7389577 (+)
G233096 NA non-coding downstream 844 7731855 ~ 7732104 (+)
G233025 NA non-coding downstream 3810 7734821 ~ 7736502 (+)
G233030 NA non-coding downstream 55066 7786077 ~ 7812277 (+)
G233026 NA non-coding downstream 60019 7791030 ~ 7793543 (+)
G233123 NA non-coding downstream 98259 7829270 ~ 7829472 (+)
G233024 NA other upstream 116665 7567523 ~ 7609893 (+)
G232870 NA other upstream 838055 6887912 ~ 6888503 (+)
G232659 NA other upstream 1350664 6374850 ~ 6375894 (+)
CI01000054_06305908_06312122 NA other upstream 1419698 6305908 ~ 6312163 (+)
G232558 NA other upstream 1684695 5993660 ~ 6041863 (+)
G233306 NA other downstream 573588 8304599 ~ 8304949 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other downstream 574926 8325126 ~ 8329716 (+)
G235560 NA other downstream 2657125 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 3833965 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 3901965 11632959 ~ 11635103 (+)

Expression


Co-expression Network