CI01000054_07755766_07787767


Basic Information

Item Value
gene id CI01000054_07755766_07787767
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7755766 ~ 7788110 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_07755766_07787767.mRNA
ATACTGAGAAGAGCTGACAAAAATGATGATGGGAAGCTGTCCTTTGATGAGTTCAAGGCTTATTTCTCAGATGGTGTTCTGTCAGGAGATGAATTAAAGGAGCTTTTCCATACAATTGACACTCATAACACAGAGAATGTGGAGACGGATGAGCTGTGTGAATACTTCTCTCAGCATCTTGGGGAATATGAAAATGTCCTTGCTGCCTTGGAAGACCTGAACGTATCCATACTGAAAGCCATGGACAAAACCAAGAAGGCCGCCTCTATAAACAGCAACCGCACTTCTGAATGTCATACTGGTGCTCGTTCTCTTGCCTTCAGTTTTCAGGACTACCAGGAAGCCACGCATCTGGAGCAGTTTGTGACACGTTTCCTGTTAAAGGAGACCACCAGTCAGTTGCAGTCTCTCCAGAGCTCTCTGGAGTGTGCCATGGAGACCACAGCTGAGCAGACCCGGCAGGAGAGGCAAGTGACACAGAATACACTTTTACATTTTGTTAAACACAATATCTACCAAACATGTGGATGTGCAGCAGCTGTGTTGTTCCACTCACCTTACGATCTCAAGAAAATTAGCTGGAGCAGCTGGCATAAAGAAATGATGAATCCTGAGGTGATTATTCTCAGCCTCAGTGCTCTGGAGGAAGAAAAGGGCACATACGCACACCCAGCAGGCTTACAGCTGAGAGCTGATCTGGAAGGAAGTTTATGTAGGAGGGAGTGTGAGGAAAGACTATCCGATTTGCGTTTGGAGCCTGTAGAAGAAGAGGTGTTGGAAAGCACCACCAAATCACACATCCTGATCGTGCAGAGGCAGCTGTCCGTGCTGGAGGAGGAAGTGGAGGAGTTTCGTCTGGCTCTCAGGCAGTACATTGACTGTGCCAACACCCAGACCGGCTGCCTCCACGTTGCAGTTCAGCGGCTTGCCAATGAATCCCGCTTCATACTGTACGAGTTCTGGGAGCAAAGCAACGTGTGGAAGAATCATCTGCAAACCAATTACAGCAAAACCTTCCAGAGAGGAAATGTGGATTTCTTAGAGACACCAGAGATTATGACGACTATGCTGGTTCCAGGTGACACCAGACATAATGAGGACCTCACAAGCCACAAAGACTGACATCTGGATCCCTGTCATCAGGAAGTGAGCACTTGAGTTCATATTTGCTGTATAGTCATAGTGACTAGCACTTGCTTTTCATGTTGTTACATTATTAGCTCTATATGAGTAGTGTACTGTAAACTGTAGACAATATCATATAAAGCAATGAGACCTTTGTACTGATGATAGCACTCCAATCCCATCAGAGTTGCATAAGCTATGTGTCCATCTGTGACGTGACAGTACAGTGATGTGTGCTGTCAGTCCGTCTCCTCACGTAGCAGTTCTTGTGATGTCATTGTTCCCGAACACAACACTGTTCCCTGACACTACCGTTCCTTATGTAGTTTGTCAGCTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_07755766_07787767.mRNA True 1465 mRNA 0.46 13 7755766 7788110

Neighbor

gene id symbol gene type direction distance location
CI01000054_07726558_07730944 TDP2B, TDP2 coding upstream 24755 7726558 ~ 7731011 (+)
CI01000054_07719547_07722201 C11H6ORF62, CUNH6ORF62, C3H6ORF62, CLG10H6ORF62, C12H6ORF62, C23H6ORF62, C6H6ORF62, C18H6ORF62, CLG22H6ORF62, C6ORF62, CSGR19H6ORF62, C4H6ORF62, C24H6ORF62, C2H6ORF62, CLG11H6ORF62, C16H6ORF62, BC005537 coding upstream 33495 7719497 ~ 7722271 (+)
CI01000054_07675827_07711906 FAM65B coding upstream 43784 7675827 ~ 7711982 (+)
CI01000054_07620269_07633084 NA coding upstream 122655 7618737 ~ 7633111 (+)
CI01000054_07599184_07601743 HEY1 coding upstream 152641 7597906 ~ 7603125 (+)
CI01000054_07816225_07819805 TMEM106B, T106B, TMEM106BB coding downstream 28115 7816225 ~ 7820975 (+)
CI01000054_07836152_07845992 SCIN coding downstream 47494 7835604 ~ 7846232 (+)
CI01000054_07852818_07853423 ARL4AB, ARL4A coding downstream 64291 7852401 ~ 7854477 (+)
CI01000054_07997892_08012569 BZW2 coding downstream 209782 7997892 ~ 8012883 (+)
CI01000054_08013660_08018583 RBBP7, RBBP4.L, RBBP4.S, RBBP4 coding downstream 225550 8013660 ~ 8018741 (+)
G233025 NA non-coding upstream 19264 7734821 ~ 7736502 (+)
G233096 NA non-coding upstream 23662 7731855 ~ 7732104 (+)
G233018 NA non-coding upstream 239160 7514404 ~ 7516606 (+)
G233017 NA non-coding upstream 242066 7508766 ~ 7513700 (+)
G233065 NA non-coding upstream 334409 7420428 ~ 7421357 (+)
G233026 NA non-coding downstream 2920 7791030 ~ 7793543 (+)
G233123 NA non-coding downstream 41160 7829270 ~ 7829472 (+)
G233127 NA non-coding downstream 44622 7832732 ~ 7832945 (+)
G233131 NA non-coding downstream 59431 7847541 ~ 7848125 (+)
G233132 NA non-coding downstream 60740 7848850 ~ 7849124 (+)
G233024 NA other upstream 145873 7567523 ~ 7609893 (+)
G232870 NA other upstream 867263 6887912 ~ 6888503 (+)
G232659 NA other upstream 1379872 6374850 ~ 6375894 (+)
CI01000054_06305908_06312122 NA other upstream 1448906 6305908 ~ 6312163 (+)
G232558 NA other upstream 1713903 5993660 ~ 6041863 (+)
G233306 NA other downstream 516489 8304599 ~ 8304949 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other downstream 517827 8325126 ~ 8329716 (+)
G235560 NA other downstream 2600026 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 3776866 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 3844866 11632959 ~ 11635103 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014892 necab1 coding NC_007130.7 CM002903.2 31437689 ~ 31522677 (-)