CI01000054_08021522_08026014


Basic Information

Item Value
gene id CI01000054_08021522_08026014
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8020943 ~ 8026014 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_08021522_08026014.mRNA
TTGGCTACCAGCTCTTCAGTTGGGGTTCACTTCATGGTTATTGTCCTGGAATTTTGTTATCTGAGTCGAGAGACAGACAGAACATTTGAACCCTTATTTATTGAAGAGGAAGGTGAAGACTACTTTGAAGATTGCTTGGAAGAGATTGAGGCTGCTCTAACTCTTCCTGGGGAGTCCATGCCTTATTCACAAAAATGCAAAGAAGCTTTGCAAGCTGAGTTTAATGGACTTATGCAACAGATGTTGGCACAGTTAGATGTTTTTGATGCAGCTCACTCAACCACATCTGCACCACTGGAGTTATTTTCAGAAACAGAGAACAAAATGGACAAGAATGGAATAACAAAAACAATCAAGTTTGGAGAGACGTGCATTCCAGAGAAAGAGCAAACTGTGTTGGAGGACGAAGATGATGCTGCAGGCATCCCTGTCGAGGCAAGGCCTGAGTTGTCTGCCACCATGGAATTACAAAAGCTCAGAGCAGCATTTGAGAGCTGTATTGAGGAGGTGGGCCAGTTGGAGCGCAGAAGGGATGAGTTGGTTCACGAGCTTCTGGAGCTGGAGGAGCCCATGGCCCAAGAGCTGCAGACTGTAAGGGAAGCTCTAGGGGAGGAAAAAGGCCTCCTGTCCAAAGTCAAGCTGGAGAGACAGAGCCTGCAGGAAGAGACTCTAATGACTAAGAGGCGCCTGTTCATAGCAGCCCGAGACTGTGCACAGAGACAAGTAGAGCTTGAAATACAACAGAAAGAGGTGGAGCAGCTCAACCAAGCTCAGGAGGAGCTGAAGTCCCTTGCTGTTAAGCTGACTGAGGAGATTACCAAGATTCATTCAGATCACCAAAGCCACCTGCAGGAAGTGCAGAAGCAGCAGAAAATCACTCAAGAAACCAGCAAGAGGAAGACCCGCTCTTATGTGACTCAAGGACGACGGGCCTCTTGTGACCTACAGCAGTACCTACAGGGTGGAATAAAAGCTCTGGAGGAATTTTATGAACCCCGGTTAGTGTCCCTGCTAAAGAGACGGGAGGCCACCATGGATGCTCTCAGTAAGGCTAAAGAGCAGTGCCTAGAGATGAAAGCCCAGTTAGAACCACTGAGAGAAGAAGAGCAGATGCTGAGACTCCAGAGGACTCGTCTGGAGGAGAGGATCCGACTAATGGAGAAACAGAGGAGGGAAAATGTAGAACAATATCGGGAGATGGTTGATATCTTAGAGGAAAACATCAGAGAAATGAAAATTCAGCTCAAGATCCAGATAAAGAAGAGTGAAGAATTGGAGATGCTGAAGAAAAGCATGGCCAAAGAGCTGATCTTCTACAGGCAAGTACAGGCACTTTTCAATGGACTGTTTCTCACTGCACACTGCAAAGTAATTTAAGGGGAAATTAATATTACACCATGCATAAATCAAGTGACAAAAACTACATCTCTCATGTTAATGCGTTTTTGTGCTAACCAAATGCTAGTTGTGCTTTGCTGGATAGCCCCGCCCACAAAGATATATTATTGGTCTACTGTATACTAAAAATCATATACGTTCTGACTGGTTGTAATTGCTGTAATTATATTTTATATTTTTGTATCCATATTTTATATATCCTTTATTGTTTTACAGAGAGAGTGTAGAGGGTCCTCGCAAGCAAGAGAACAGTGTGGTGGTGGAAAAAACCTAATGAACTAATGCTTGTGTTATTAATTATCTCATTAGTTGTTAAATGCTTTTGATATATTGTCATAGTTTAACCTGAATGGCATGTCTTCTCTCTCATAAACAATCACCAAAACAATAAGCACAATTTACTGAAGACACAAGTCAATGTTTTCTGCAAACCAATTTTAAAAAGCTCTCTGAACACTAGGACCAAGCACGTCAGATCAAGATCTTTATCTGACAAGCTCAGAATGTTCTTAAAACAGTGTTTTTGTTGCGTGTCAGTTGTGTATAAGAGGGAATAAA

Function

NR:

description
novel protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_08021522_08026014.mRNA True 1956 mRNA 0.43 4 8020943 8026014

Neighbor

gene id symbol gene type direction distance location
CI01000054_07985093_07994157 NA coding downstream 26012 7984803 ~ 7994931 (-)
CI01000054_07978918_07980431 SOSTDC1B coding downstream 40468 7978489 ~ 7980475 (-)
CI01000054_07936687_07947936 MEOX2B, MEOX2 coding downstream 73007 7936471 ~ 7947936 (-)
CI01000054_07874540_07894985 NA coding downstream 125621 7874244 ~ 7895322 (-)
CI01000054_07793409_07805739 TMEM55A coding downstream 215204 7793199 ~ 7805739 (-)
CI01000054_08032736_08043035 NA coding upstream 6371 8032385 ~ 8043316 (-)
CI01000054_08091223_08096443 YARS coding upstream 64583 8090597 ~ 8096443 (-)
CI01000054_08099220_08112291 NA coding upstream 71661 8097675 ~ 8112291 (-)
CI01000054_08228712_08238666 FAM49A, FA49A coding upstream 202647 8228661 ~ 8238666 (-)
CI01000054_08272679_08293481 NA coding upstream 246505 8272519 ~ 8295165 (-)
G234167 NA non-coding downstream 120163 7900538 ~ 7900780 (-)
G234065 NA non-coding downstream 184103 7836063 ~ 7836840 (-)
G234131 NA non-coding downstream 186322 7834072 ~ 7834621 (-)
G234129 NA non-coding downstream 188241 7832492 ~ 7832702 (-)
G234128 NA non-coding downstream 189588 7831113 ~ 7831355 (-)
G234207 NA non-coding upstream 4881 8030895 ~ 8031398 (-)
G234210 NA non-coding upstream 13385 8039399 ~ 8039797 (-)
G234220 NA non-coding upstream 95164 8121178 ~ 8121700 (-)
G234268 NA non-coding upstream 185056 8211070 ~ 8211278 (-)
G234298 NA non-coding upstream 258258 8284272 ~ 8284602 (-)
CI01000054_07165957_07169539 HEYL other downstream 849270 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 1366930 6628082 ~ 6642160 (-)
G232274 NA other downstream 2811703 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 3348710 4670151 ~ 4681361 (-)
G231645 NA other downstream 4038120 3981847 ~ 3982823 (-)
G235216 NA other upstream 1222025 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 1457133 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 1837307 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 2777857 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 2845090 10871104 ~ 10881495 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location