CI01000054_08056620_08072625


Basic Information

Item Value
gene id CI01000054_08056620_08072625
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8056506 ~ 8073345 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_08056620_08072625.mRNA
CTATAAATAAAGCAGTATTAATATATTCACAATCACAATGTGAAAAACAGGAAACAGAGAAAAGCAAGTTTCTAGCTGAGAGAAAGTTTCTCTTACAAGGAACCGAAGTATGACATGAAAACAACTGACACACTTTTGTCACTCCGAGCTATGATGAACGAAGCAGGCGGCAGATTAACAATGATTCGCAAAGCTTTCAGTATTTGTAAAGCCTGGACTCTTGATTACAGTGAGAGGAGGATGGAGGGGAGGAAACAAGGGAAGGAGAGGCCCAATTGGTACCTGGAAAAGGCGAGGAGGGAGGGTCTCGTACACACACGCTCTGCACACACACGGGATCACAAGCACAGCAGAGAGTGGGACATTTCTGTCCCTGATGCGGCAGCAGGAGCGCTAAGCGGGAAGAGGAATATAAAGGCTTTGGGAGCAGGAGGGAGAGAGCAGGGAAGCATATGTGGAACTCCGGTGGGCTTGAGGAGTCTAAAGCTGTTGGGGCCTGAGATCAGTGCCATGGGGAACTCAAACAGCAAGAAGAAAACCCAGGCCAACCTTACCAGCAGTCGCCGCACTAGCAGAGTAAAGTCAATCTGGCACTTTAGACATGTGGATAAATTCAAAACAGGCAGACAGTCAGTTCTCTGTCATTTAAAATCACAGGGGAATGCCACAGCGCTGAGACACCGAACAGAAAATGAAATCAAAAGTGCACATCAAAAAGAGTTGCTGCTTACAGAGATGAGCAAATCTCCTGTCAAAAATATCCCTTTCATCTTTGTCTTGGTTGTTCCTTTACTAAAAAACAAGATTCCTGTCCTCGAGTGGAACATTTCACCAACCTTACTTGCTTATCAGCCTGTTCATGTCACAGCGCTAATCCAGGTGGCGTCTTTGCCTGCCATCCTGTCTAACAAATTAGACAGCTCAAGACTTGAGCAACTCACATTTACAGCTTCTGATTCATGTGACAAAATCAAGTTGGAAGCAGCGTAATGGAAATGAGAGGGGAAAACTGGAGTGATGACAGTTGATGAAAAAACCACCACTGCCATTGTTTGCAGTCATTTCAACATCTTATAACCAGGGATAGTGTCTTTGTGTGGTCATATTCAACAGGGTTTGTCTTGTTTTAGGAAACAATGATGAAATGATGAAATCTAACAAATGGAATGCTGATATCATTTTCACAGTGTATTTAGTGAGTAATGTAGCAAATATCTTCCATATTAACCTTACATCAGAATAATAGTAAAAATGTTCCAATCATCTGGAAGCAGCAGCATAGTATTTTCCATTTCCTGCCAGTTTTTCATTTTCCTATTACTTCCTATGAGTCTGAATGGAGTTTTTGTTTGATTAAACTTAACAATAATGTACAATGCTAGATATACAGTATATATATATATACACAGTATATATATGTAAGCAATAAGGTACGAGAGGCTGTGCTGTATTGTGAACAAGTCACGGCTGAAGGGCATTGTTAGGCACGATGCGAAGCAGAGTGCTTGCAACCCCTTCAGCCGTGACTTGTTCACGATACAGAACTAGCCTCCAGTACCTAATTGCTTTTATAAAACGGTTACCACACAATACAAATATTGAAGCAACTTTCATGAAGTAAACGTTAACTAAAAGCCTTCCTTCCCCCGGAAAAAAATAGTCCGTGACCGTGAACAGCAACGAAGTTACATTATAATGCCATTAGATGGA

Function

NR:

description
PREDICTED: uncharacterized protein KIAA1522 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_08056620_08072625.mRNA True 1710 mRNA 0.42 5 8056506 8073345

Neighbor

gene id symbol gene type direction distance location
CI01000054_08013660_08018583 RBBP7, RBBP4.L, RBBP4.S, RBBP4 coding upstream 37765 8013660 ~ 8018741 (+)
CI01000054_07997892_08012569 BZW2 coding upstream 43623 7997892 ~ 8012883 (+)
CI01000054_07852818_07853423 ARL4AB, ARL4A coding upstream 202029 7852401 ~ 7854477 (+)
CI01000054_07836152_07845992 SCIN coding upstream 210274 7835604 ~ 7846232 (+)
CI01000054_07816225_07819805 TMEM106B, T106B, TMEM106BB coding upstream 235531 7816225 ~ 7820975 (+)
CI01000054_08081739_08089067 NA coding downstream 7808 8081153 ~ 8089811 (+)
CI01000054_08149724_08152046 MYCLB coding downstream 75512 8148857 ~ 8152968 (+)
CI01000054_08155292_08167525 NA coding downstream 81947 8155292 ~ 8167780 (+)
CI01000054_08174433_08193026 TRIT1 coding downstream 101088 8174433 ~ 8193026 (+)
CI01000054_08196671_08203451 NA coding downstream 123159 8196504 ~ 8203851 (+)
G233200 NA non-coding upstream 72670 7983599 ~ 7983836 (+)
G233199 NA non-coding upstream 74550 7981313 ~ 7981956 (+)
G233198 NA non-coding upstream 75338 7980745 ~ 7981168 (+)
G233183 NA non-coding upstream 121869 7934385 ~ 7934637 (+)
G233180 NA non-coding upstream 125436 7930787 ~ 7931070 (+)
G233206 NA non-coding downstream 17176 8090521 ~ 8095560 (+)
G233228 NA non-coding downstream 42254 8115599 ~ 8115863 (+)
G233233 NA non-coding downstream 47751 8121096 ~ 8121700 (+)
G233254 NA non-coding downstream 190973 8264318 ~ 8265518 (+)
G233262 NA non-coding downstream 210931 8284276 ~ 8284553 (+)
G233024 NA other upstream 446613 7567523 ~ 7609893 (+)
G232870 NA other upstream 1168003 6887912 ~ 6888503 (+)
G232659 NA other upstream 1680612 6374850 ~ 6375894 (+)
CI01000054_06305908_06312122 NA other upstream 1749646 6305908 ~ 6312163 (+)
G232558 NA other upstream 2014643 5993660 ~ 6041863 (+)
G233306 NA other downstream 231254 8304599 ~ 8304949 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other downstream 232592 8325126 ~ 8329716 (+)
G235560 NA other downstream 2314791 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 3491631 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 3559631 11632959 ~ 11635103 (+)

Expression


Co-expression Network