CI01000054_08228712_08238666 (FAM49A, FA49A)


Basic Information

Item Value
gene id CI01000054_08228712_08238666
gene name FAM49A, FA49A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8228661 ~ 8238666 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_08228712_08238666.mRNA
ATGCTCAGCCCACAGAGGCCGAGACAGCCGTGTGGAACCAGGTTAGTGCCGTGCTGGAAGAGGCCCATGGGATACTGGCGGAGTTACAGTCTTACAATGGAGCAGGACAGGAAATAAGAGAGGCGATTCAGAACCCCAATGACCTCCAGTTGCAGGAGAAAGCCTGGAATGCAGTCTGCCCTCTAGTGGCCAAGCTCAAGAGATTCTATGAATTTTCTCTCAGGCTAGGAATACTTGATTCTGATGGATCAATAATGCTGCAGAGGGCTGCGGCTTCCAACGTTCTTCAGTATCTAGGCAACACTGACAGGATTACAGGTTCGTACGATAAATTGCAGCAATTACAAAAATACAAAAGAGAGGCGTTAGAGGTAAATACAATGATAACTGTTGTGCTGGTAACCATGGAGATGAAGTACACATATTGCAGTGCTGCGTTATTGATATATTATGCTGGTATGCTGTGTGAATTACAAATTGGATTAAAGCATCTGGAGAGAGAGCAGGCCCTCGCCAAACAGTTTGCTGAAATCCTGCACTTCACTCTCAGCTTTGATGAGCTTAAGATGACAAATCCAGCCATACAGAATGACTTTAGCTACTATAGGAGGACCATCAGCAGGAATCGTCTGAACAACCAGCAGTTAGAAGCTGAGAATGAAGTAAATAATGAAATGGCCAATCGGATGTCGCTCTTCTACGCTGAAGCCACACCCATGCTCAAAACCCTGAGCAATGCCACAACTAAGTTTGTGTCGGAGAATAAGACTTTGCCAATTGAGGACACCACAGATTGCCTGAGCACTATGGCCTGCGTGTGCCGTGTCATGCTAGAGACTCCGGAGTACCGGTGCCGTTTCACTAACACAGACACCATGCTGTTCTGCATGCGTGTGATGGTGGGCGTCATCATCCTTTATGACCATGTTCATCCAGTGGGTGCCTTTGCCAAGACCTCCAAGATTGATATGAAGGGCTGCATCAAGGTGTTGAAAGAGCAGCCTTCAAACAGCGTGGAGGGTCTGTTGAATGCACTGAGGTATACAACAAGACATTTAAATGATGACAGCACCTCTAAACAAATCAGGGCTCTGCTTCAATGAGATCAGGAGGAGAGGGAGGGACCACAGAGAAAGAGACTGTCAGAGAATAAA

Function

symbol description
fam49a Acts upstream of or within regulation of T cell differentiation and thymus development. Predicted to be located in membrane. Is expressed in several structures, including adaxial cell; digestive system; musculature system; sensory system; and trunk. Orthologous to human CYRIA (CYFIP related Rac1 interactor A).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_08228712_08238666.mRNA True 1154 mRNA 0.47 11 8228661 8238666

Neighbor

gene id symbol gene type direction distance location
CI01000054_08099220_08112291 NA coding downstream 116370 8097675 ~ 8112291 (-)
CI01000054_08091223_08096443 YARS coding downstream 132218 8090597 ~ 8096443 (-)
CI01000054_08032736_08043035 NA coding downstream 185345 8032385 ~ 8043316 (-)
CI01000054_08021522_08026014 NA coding downstream 202647 8020943 ~ 8026014 (-)
CI01000054_07985093_07994157 NA coding downstream 233730 7984803 ~ 7994931 (-)
CI01000054_08272679_08293481 NA coding upstream 33853 8272519 ~ 8295165 (-)
CI01000054_08353876_08358232 NA coding upstream 114710 8353376 ~ 8358232 (-)
CI01000054_08375424_08376756 NA coding upstream 136405 8375071 ~ 8376980 (-)
CI01000054_08400578_08406066 NA coding upstream 161865 8400531 ~ 8406066 (-)
CI01000054_08425960_08439362 NA coding upstream 187277 8425943 ~ 8439430 (-)
G234268 NA non-coding downstream 17383 8211070 ~ 8211278 (-)
G234220 NA non-coding downstream 106961 8121178 ~ 8121700 (-)
G234210 NA non-coding downstream 188864 8039399 ~ 8039797 (-)
G234207 NA non-coding downstream 197263 8030895 ~ 8031398 (-)
G234167 NA non-coding downstream 327881 7900538 ~ 7900780 (-)
G234298 NA non-coding upstream 45606 8284272 ~ 8284602 (-)
G234320 NA non-coding upstream 65348 8304014 ~ 8304462 (-)
G234321 NA non-coding upstream 65937 8304603 ~ 8304960 (-)
G234322 NA non-coding upstream 90799 8329465 ~ 8333698 (-)
G234347 NA non-coding upstream 192975 8431641 ~ 8431991 (-)
CI01000054_07165957_07169539 HEYL other downstream 1056988 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 1574648 6628082 ~ 6642160 (-)
G232274 NA other downstream 3019421 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 3556428 4670151 ~ 4681361 (-)
G231645 NA other downstream 4245838 3981847 ~ 3982823 (-)
G235216 NA other upstream 1009373 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 1244481 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 1624655 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 2565205 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 2632438 10871104 ~ 10881495 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014126 fam49al coding NC_007130.7 CM002903.2 30633453 ~ 30684874 (+)
bowfin (Amia calva) AMCG00011046 LOC106589091,LOC103035846,LOC105892259,LOC103143294,LOC108257369,LOC105006285,LOC107691525 coding CM030133.1 CM030133.1 8721384 ~ 8735583 (-)