XLOC_009877 (flad1)


Basic Information

Item Value
gene id XLOC_009877
gene name flad1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22864313 ~ 22881338 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019704
CACATTTCGAGCTTGACAAGAGCTTGcacattgttgttattgttgtgttTTGACTGTGTAACATACATTACTGAATTAAACAATGCTAAAAtgtagctttattttatttttgattgataCAAAGTCACACCcatttggcaaaaataaaaatatttttgtagattTGCTtggtttaaattgttttattgtagtcacactgatttattaataacaatacgATGTTTTCTGTGTTAAATAAATtcttaattaaaatcaattcataAAGTCAGATAAGTCACTCTCATGTCGCCACCTACTGCTGAAGACAACACTGAACGAATCCGTGAGTGAATCAACCGATTCACTATTATGAATCACAACCCCCCCTCCGCTAGAGGGAAACATATGAAGGTTTGGAACTGAAACATCTTTTCCGGGTTTCAGGACTACAAACTAAACAGCACTACAACAACAGAGCAACAGAGAAAGTGCCCGCAAAACTTTATTGGTTGGTTATAACGGTGGGGTTTTCAAAATGGTCCGCGTGTGTGCTTTTCCAGGATGCTTTAACCGTGAGAAACCCCTCAGACTCCGTCAGTCGGCGTCATCGCACGAGGAAAGTTTGACTTTTCACTCGTTGCCCCTTCAAGACTTTAAAAGGTTGAATCTGTGGCTGAACGCTGTTCGTCGAGACACAAAGTCCTCAATTCGGAACATCCGTGGACTGAGGGTGTGCAGTGAACATTTCGCACAGGACGATTTCAGTCTGAACAGAGGAAGTAAACGACGACTGAAATCAACCGCTGTACCGAAATGTAATGAGGCATTGCCTCAGATTAGGAGAGCGGTCAAGAGGGTTCAGCGAATTGGAGCCCAGATCATCCCAATGGCTCAGAACTGCAATACATCCTCCACACAGAAAAATGGCAGCGCCACAGCAGCGATTCTCATCATAGGAGATGAGATCCTCAAGGGTCACACTGTCGACACTAACAGTGCCTTCTTGTGTCGTGGCCTTCGAAAGCTTGGCATCACAGTGGAGCGCATCACTGTGGTACCGGACGTCCAGGAAGTCATCGCTAAAGAAGTATCTCAGCTTTCCTCCACCGTTACTCACCTCATCACATCAGGTGGCATTGGTCCCACCCATGATGATGTCACTTTTGAGAGCGTTGCTATGGCATTTGGAGAAGAACTTTATGCCCACCCTGAAATGACAAAGCTAGTGGAGGGATTTTTTGGTACAGTCACTTCTGACAGTGCCCCCATGAAGCTTGCTATGGTCCCAGCATCTGCAAAACTCAATTTTGGCATAGACCCTCAGACAGGCCAACGAAACCGATTCCCGCTAGTCAGCGTTCACAACGTATACATATTTCCTGGCATCCCTTCTCTACTTGAGAAGTCTTTCAATGGACTTAGCCATCTATTTTCAGGGTCTGGTACCACCTTTCACACCCGTGAAGTATTCGTGAATGCAGATGAGACTGAGATAGCCCAGAGTCTCTCAAAACTGCAGGCAGGTTGGGGCAAGCGTGTCTCTTTGGGCTCTTATCCAGACTGGCTTAGTAATTATCATCGTGTCCGACTGGTTCTGGACACAGACAGTGTAGAGGAAGTGGAACGGGCTCGAACTCAATTAATAGAAGAGCTTCCTAAAGGATCGGTGGTTCCCCTTGTCACTGACCCGATCTCTGTCGCAGCTCAAGAGGTTTACTCGCTCTCTAAAAGTGAGACACAGTTGGGGAAGAAAGTAGCTGCAGCATTGGGGACCATTGAGATGGCGTTGGATAAATATTCTGTTAATGAGATCTGTGTTGGCTTTAATGGTGGCAAGGACTGCACAGCTCTACTACATCTATATTATGCTGCACTGAAACGGAGGTATCCAGATGGTAAAGACCGACTAAAAGCACTGTACATTCGCATTGTCTCTCCTTTTCCAGAAATGGAGAGGTTTTTGCAGGACACAATTAAAAGGTATGACCTGGAGCTGTTCTCAGTGGAGGGCAGTATTCGGCAGGCTCTGAATGAGGTGAAGGAAAGGAGGCCAGATTTAAGGGCAGTTCTGATGGGAACGAGACGGACCGACCCTTACTCTCACACTCTGACACCGTTCTGTCCCACAGACCCAGGCTGGCCTGATTACATGAGGGTCAACCCACTGCTGGAATGGACATATCATGACATCTGGTCGTTCCTGAGAACACTGTATGTGCCCTACTGTATTCTCTATGACAAGGGATACACTTCTTTAGGTAGTATGGATAATTCATACAGGAATCCATCTCTTAAAATGGTGGACGAGAGGGGAGCGACCCGCTATAAACCAGCCTACATGCTGGAAAATGAAGAGGAGGAACGCAACTCAAGGGAATGATGATTCTTCGGATAAAGTTTTTAACCAAGGCCATTTTAACTACCTGTGGTAGTTTGTGTTGTGCCTCTGCCTATGAATGTTGTGAAGGAATGTGAGAAGTATCACTGTATGCTGTATTTAAGATTCATATTAAAACAGTATCAACGTGTCTTCTTTTTAAATCATCAATCTTATGACCAGTGGTAATATTCATGATTTGTGTTTTGCACCTGAAAGAGACTGCGAATTTGCTCTGCATCATCTGAGGAAATCTTTAGTTGGATAACATGGAAAACTGAATGGTATGTTAATTATGTATTGCGTAAGTTTCAGCAAACAAAGacgtaaaaacaataaaactgagTTTTACTTGTGTTGACATCTAGAGAACCTGTGAGGGATCATACTCATTCATGCTCGTCTCCAGGTAATGAAATGCAGTGTCGGTTTCCGGCCTCACGGGTGCGATGTAGATacgttgtagttttttttttacagtatggttgttGTCCGTTTAAAATCTATAATACTATCATAATTTACTCCTTATCCAAGCTAGAATTAATCCAAGACAATTTATATTCTCCCACGGTCAGTTAATGTTAAATTCTCTTTTTGCATTGTACAATTCATTTGATAAAAACACCGATATAGTATAATAGCCCTTTTATATAggctacatcaggggtgtccaaactcggtcccagagggccggtgtcctgcaaagtttagtttcaaccccaatcagacacacctcaGCTAGCTAATCAGGCTCTTACTAGGCCTAGAAAAAtcgtgttgaggcaagttgaagctaaaaccTGCGGACCTCCATGACAGTTTTTACCTCTTGGCTACATAGTTATTAGTTAAAACAAACGCAAATAAAAATGTTAGGCCGTCCAGTATTCTAGTTGATGGTTGTGAAATTTAACCATACATGCAAGAATGAGaatataaattaatttgttttgttgaacTAATACGTTTAAATGTCTGCCAATATATaaggtttaaaattttttaatctTTCAGATGCTTTTTAGGTAGCACTGGCTCTGGTGCAGTGATACATTATAATTGTTAAAATAGGCTATGAAATATTTAAGTTTGGAAAAGTAACTACATACACAGGTAAATATGCTCCAATTTCATAACAAGTGCTGAAAAAATAACATGGTGGAAAGTACATGTTGCTGGTTCTTGGTTAGTTCCCATGGTGTTAGGGACTAACCTACAGATCCAAAAAGGTGTAAAGCCAGTGTAAAGGGGTTATAGATTATTTAAACGGtctaatactgctaataatgcattattacatGTAAACAATTATGACACTGAAATTTTATTtctgaatttgttttgtttttatcaaagtTAAATGCCAAATTATGTTTGAATTATTTacgtttatttaatttacagtaaCACAAAGAAAAGCTATTGTTGTAATACGTGATTCCCACAAACATGGTTGAAAGTACAACTcgtgtgaaattaaaatgaaaagtgaaattaaaatgaaGGTGTAAAACATATAACAAACTACTGATACAGCAAAGTTTGTCTACGGTTTTATGAAGGCCCACCCACTTGAACATATCTGGCCCCGCCCCTGAAGCAGGTGTCTATGTTCAAACATGCCAACACTCTTTATTATACCATCATTTCATTCCAGCTTGTAAGAAGCAACTCAGTAAAGGTAAAATGAGACTAAATGTATTCCCTTTATCTAGTGCCAATAGCTGACATCTAACTCCAATCATCTCACAGCCATCAAAAGGTAAGTcaaatcatgttttattttgctattttatgtaaaattcaaGTGTCTTCAGTATTATTAGTCCAGTTCTGTGCCACGTGATCCTTTAGAAGtcattaactgttttttttttttttttttaagtgtcaaTGTTGAAATCAGTGCTGCTTTCATTTATCATTCAGTggaacaataaaaaaatcagtttcacATTAAAGAAATCTGAAGTGTTACCAATGGTTAATGATTGACTGATCAAAGCAGCACATAAAGATCAGGAATTTCAAAAGAGACATTTATCTAGTTGATTTATTAAGAGTTCTATCATTACACCCGttcaaatgataataaaaatagtaacaatATCAATACAACTATTTCCAAGCACGAGTAacatatatgtttaaataaagcCCTACGCATATCCATTTTATCTGTTCTCAGTTAAATGTATGGTATTTAAcaactttgaattttttttttataattcccaaatgatgtttaacagaacaagagattttttcagttttatttcagctagaataaaagc
>TCONS_00019705
TTTCCGGGTTTCAGGACTACAAACTAAACAGCACTACAACAACAGAGCAACAGAGAAAGTGCCCGCAAAACTTTATTGGTTGGTTATAACGGTGGGGTTTTCAAAATGGTCCGCGTGTGTGCTTTTCCAGGATGCTTTAACCGTGAGAAACCCCTCAGACTCCGTCAGTCGGCGTCATCGCACGAGGAAAGTTTGACTTTTCACTCGTTGCCCCTTCAAGACTTTAAAAGGTTGAATCTGTGGCTGAACGCTGTTCGTCGAGACACAAAGTCCTCAATTCGGAACATCCGTGGACTGAGGGTGTGCAGTGAACATTTCGCACAGGACGATTTCAGTCTGAACAGAGGAAGTAAACGACGACTGAAATCAACCGCTGTACCGAAATGTAATGAGGCATTGCCTCAGATTAGGAGAGCGGTCAAGAGGGTTCAGCGAATTGGAGCCCAGATCATCCCAATGGCTCAGAACTGCAATACATCCTCCACACAGAAAAATGGCAGCGCCACAGCAGCGATTCTCATCATAGGAGATGAGATCCTCAAGGGTCACACTGTCGACACTAACAGTGCCTTCTTGTGTCGTGGCCTTCGAAAGCTTGGCATCACAGTGGAGCGCATCACTGTGGTACCGGACGTCCAGGAAGTCATCGCTAAAGAAGTATCTCAGCTTTCCTCCACCGTTACTCACCTCATCACATCAGGTGGCATTGGTCCCACCCATGATGATGTCACTTTTGAGAGCGTTGCTATGGCATTTGGAGAAGAACTTTATGCCCACCCTGAAATGACAAAGCTAGTGGAGGGATTTTTTGGTACAGTCACTTCTGACAGTGCCCCCATGAAGCTTGCTATGGTCCCAGCATCTGCAAAACTCAATTTTGGCATAGACCCTCAGACAGGCCAACGAAACCGATTCCCGCTAGTCAGCGTTCACAACGTATACATATTTCCTGGCATCCCTTCTCTACTTGAGAAGTCTTTCAATGGACTTAGCCATCTATTTTCAGGGTCTGGTACCACCTTTCACACCCGTGAAGTATTCGTGAATGCAGATGAGACTGAGATAGCCCAGAGTCTCTCAAAACTGCAGGCAGGTTGGGGCAAGCGTGTCTCTTTGGGCT
>TCONS_00019706
ACGTCACGTGACGGTTGTACAACCAAGTTTCTTACTGACCGAGCAGGCTGTTATGCGAGTTCTCGCACGataatacacatttacaaaacaattCCAACGTCGGAAACGTAGAATCAGGTTCAGCTTTATTTTTCGCACTGTGTTGGTTATAATCTTCAGCTGCGTTTAATGTTTGCGAATAGCTTACTCTGGTTTCACGGTACGGACGTGCGGCGCACTTGGGACTTTGACATCACACATACAGTATGACCGCGACGATACCTTGAGAACTGTAATGCAGTCATTGATTTGCCTGATTCAGTCTTCAACATGATAAATGATCTATTATGTAGTTGTTAGGTGGTCACGCAGTCCGGACAAACGCCCGTATACAGTTACATGCCGACCAGGCATTGCCTCAGATTAGGAGAGCGGTCAAGAGGGTTCAGCGAATTGGAGCCCAGATCATCCCAATGGCTCAGAACTGCAATACATCCTCCACACAGAAAAATGGCAGCGCCACAGCAGCGATTCTCATCATAGGAGATGAGATCCTCAAGGGTCACACTGTCGACACTAACAGTGCCTTCTTGTGTCGTGGCCTTCGAAAGCTTGGCATCACAGTGGAGCGCATCACTGTGGTACCGGACGTCCAGGAAGTCATCGCTAAAGAAGTATCTCAGCTTTCCTCCACCGTTACTCACCTCATCACATCAGGTGGCATTGGTCCCACCCATGATGATGTCACTTTTGAGAGCGTTGCTATGGCATTTGGAGAAGAACTTTATGCCCACCCTGAAATGACAAAGCTAGTGGAGGGATTTTTTGGTACAGTCACTTCTGACAGTGCCCCCATGAAGCTTGCTATGGTCCCAGCATCTGCAAAACTCAATTTTGGCATAGACCCTCAGACAGGCCAACGAAACCGATTCCCGCTAGTCAGCGTTCACAACGTATACATATTTCCTGGCATCCCTTCTCTACTTGAGAAGTCTTTCAATGGACTTAGCCATCTATTTTCAGGGTCTGGTACCACCTTTCACACCCGTGAAGTATTCGTGAATGCAGATGAGACTGAGATAGCCCAGAGTCTCTCAAAACTGCAGGCAGGTTGGGGCAAGCGTGTCTCTTTGGGCTCTTATCCAGACTGGCTTAGTAATTATCATCGTGTCCGACTGGTTCTGGACACAGACAGTGTAGAGGAAGTGGAACGGGCTCGAACTCAATTAATAGAAGAGCTTCCTAAAGGATCGGTGGTTCCCCTTGTCACTGACCCGATCTCTGTCGCAGCTCAAGAGGTTTACTCGCTCTCTAAAAGTGAGACACAGTTGGGGAAGAAAGTAGCTGCAGCATTGGGGACCATTGAGATGGCGTTGGATAAATATTCTGTTAATGAGATCTGTGTTGGCTTTAATGGTGGCAAGGACTGCACAGCTCTACTACATCTATATTATGCTGCACTGAAACGGAGGTATCCAGATGGTAAAGACCGACTAAAAGCACTGTACATTCGCATTGTCTCTCCTTTTCCAGAAATGGAGAGGTTTTTGCAGGACACAATTAAAAGGTATGACCTGGAGCTGTTCTCAGTGGAGGGCAGTATTCGGCAGGCTCTGAATGAGGTGAAGGAAAGGAGGCCAGATTTAAGGGCAGTTCTGATGGGAACGAGACGGACCGACCCTTACTCTCACACTCTGACACCGTTCTGTCCCACAGACCCAGGCTGGCCTGATTACATGAGGGTCAACCCACTGCTGGAATGGACATATCATGACATCTGGTCGTTCCTGAGAACACTGTATGTGCCCTACTGTATTCTCTATGACAAGGGATACACTTCTTTAGGTAGTATGGATAATTCATACAGGAATCCATCTCTTAAAATGGTGGACGAGAGGGGAGCGACCCGCTATAAACCAGCCTACATGCTGGAAAATGAAGAGGAGGAACGCAACTCAAGGGAATGATGATTCTTCGGATAAAGTTTTTAACCAAGGCCATTTTAACTACCTGTGGTAGTTTGTGTTGTGCCTCTGCCTATGAATGTTGTGAAGGAATGTGAGAAGTATCACTGTATGCTGTATTTAAGATTCATATTAAAACAGTATCAACGTG
>TCONS_00019707
ACCAAGTTTCTTACTGACCGAGCAGGCTGTTATGCGAGTTCTCGCACGataatacacatttacaaaacaattCCAACGTCGGAAACGTAGAATCAGGTTCAGCTTTATTTTTCGCACTGTGTTGGTTATAATCTTCAGCTGCGTTTAATGTTTGCGAATAGCTTACTCTGGTTTCACGGTACGGACGTGCGGCGCACTTGGGACTTTGACATCACACATACAGTATGACCGCGACGATACCTTGAGAACTGTAATGCAGTCATTGATTTGCCTGATTCAGTCTTCAACATGATAAATGATCTATTATGTAGTTGTTAGGTGGTCACGCAGTCCGGACAAACGCCCGTATACAGTTACATGCCGACCAGACCTTCTCCATCTGTCTCTTCCTTTTTCTTTCTCTACCTTTCTTCTGTGTCATCATTTTCCGGCTGAATGCTGCAGGCATTGCCTCAGATTAGGAGAGCGGTCAAGAGGGTTCAGCGAATTGGAGCCCAGATCATCCCAATGGCTCAGAACTGCAATACATCCTCCACACAGAAAAATGGCAGCGCCACAGCAGCGATTCTCATCATAGGAGATGAGATCCTCAAGGGTCACACTGTCGACACTAACAGTGCCTTCTTGTGTCGTGGCCTTCGAAAGCTTGGCATCACAGTGGAGCGCATCACTGTGGTACCGGACGTCCAGGAAGTCATCGCTAAAGAAGTATCTCAGCTTTCCTCCACCGTTACTCACCTCATCACATCAGGTGGCATTGGTCCCACCCATGATGATGTCACTTTTGAGAGCGTTGCTATGGCATTTGGAGAAGAACTTTATGC
>TCONS_00019708
AGACACAGTTGGGGAAGAAAGTAGCTGCAGCATTGGGGACCATTGAGATGGCGTTGGATAAATATTCTGTTAATGAGATCTGTGTTGGCTTTAATGGTGGCAAGGACTGCACAGCTCTACTACATCTATATTATGCTGCACTGAAACGGAGGTATCCAGATGGTAAAGACCGACTAAAAGCACTGTACATTCGCATTGTCTCTCCTTTTCCAGAAATGGAGAGGTTTTTGCAGGACACAATTAAAAGGTATGACCTGGAGCTGTTCTCAGTGGAGGGCAGTATTCGGCAGGCTCTGAATGAGGTGAAGGAAAGGAGGCCAGATTTAAGGGCAGTTCTGATGGGAACGAGACGGACCGACCCTTACTCTCACACTCTGACACCGTTCTGTCCCACAGACCCAGGCTGGCCTGATTACATGAGGGTCAACCCACTGCTGGTAAGAAGGAAatgaaatgtttgtgtgtgcgtgtgtgagagagagagaaaatacaaAAGAGATTTGTACATATGGTgtagggcagcacaatatatcgtttgagcatcgatatcgcgtTATGTGGTCCgcagtagtcacatcgcaagatatgcaagaTATGACCAGACTCTACAGGTCAAAACACAAGATTTGTTTAGACACTGCAGAATtgaaccataatagagtgaaagtttatcatctgcgTGTGTTTTTAAGGACTGTGATTGAGCATTTTAAGATTTCAAAGCATTTTAGTTGTgcataaagaagtttaataaaggttatttttatt

Function

symbol description
flad1 Predicted to enable FMN adenylyltransferase activity. Predicted to be involved in FAD biosynthetic process. Predicted to be located in cytoplasm. Orthologous to human FLAD1 (flavin adenine dinucleotide synthetase 1).

GO:

id name namespace
GO:0006747 FAD biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003919 FMN adenylyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00740 Riboflavin metabolism

ZFIN:

id description
ZDB-GENE-040822-44 Predicted to enable FMN adenylyltransferase activity. Predicted to be involved in FAD biosynthetic process. Predicted to be located in cytoplasm. Orthologous to human FLAD1 (flavin adenine dinucleotide synthetase 1).

Ensembl:

ensembl_id ENSDARG00000070390

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019704 False 4653 mRNA 0.39 8 22864313 22881338
TCONS_00019705 False 1120 mRNA 0.49 3 22864722 22872525
TCONS_00019706 False 2094 mRNA 0.47 8 22865942 22879192
TCONS_00019707 False 824 mRNA 0.47 3 22865963 22872178
TCONS_00019708 True 768 lncRNA 0.43 3 22872860 22876095

Neighbor

gene id symbol gene type direction distance location
XLOC_009876 CR854942.1 coding upstream 73432 22761846 ~ 22790881 (+)
XLOC_009875 NA coding upstream 167817 22695226 ~ 22696496 (+)
XLOC_009874 chrnb2 coding upstream 186019 22618620 ~ 22678294 (+)
XLOC_009873 she coding upstream 260959 22587661 ~ 22603354 (+)
XLOC_009872 NA coding upstream 284987 22575143 ~ 22579326 (+)
XLOC_009878 efna3b coding downstream 205988 23087326 ~ 23189883 (+)
XLOC_009879 efna1b coding downstream 401317 23282655 ~ 23298149 (+)
XLOC_009880 slc50a1 coding downstream 422521 23303859 ~ 23314878 (+)
XLOC_009881 krtcap2 coding downstream 444747 23326085 ~ 23392266 (+)
XLOC_009882 s100a10b coding downstream 516447 23397785 ~ 23399484 (+)
XLOC_009870 NA non-coding upstream 535285 22327970 ~ 22329028 (+)
XLOC_009869 NA non-coding upstream 536811 22323766 ~ 22327502 (+)
XLOC_009868 NA non-coding upstream 750377 22022291 ~ 22113936 (+)
XLOC_009889 CR533578.1 non-coding downstream 725893 23607231 ~ 23607352 (+)
XLOC_009902 NA non-coding downstream 1137770 24019108 ~ 24028618 (+)
XLOC_009903 NA non-coding downstream 1317141 24198479 ~ 24207903 (+)
XLOC_009904 CT867948.1 non-coding downstream 1634754 24516092 ~ 24524076 (+)
XLOC_009905 NA non-coding downstream 1684396 24565734 ~ 24573801 (+)

Expression


Co-expression Network