CI01000054_08485645_08496381


Basic Information

Item Value
gene id CI01000054_08485645_08496381
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8485428 ~ 8496865 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_08485645_08496381.mRNA
ATATTAAATTCACCCTTAGAGGTTGTAGTCTCTCAATCCAGTCTTCAAAAATCAATGTGGGTGTGATCTGTGAAACTATCCAAATCACATCTCCCAGAGACCATCAGCGCACGGGCAGAAAGGAGAGTGAGCGTTTCTGGCTGGGTCTCCTGGGTTTGGCCCTGGGCCAGACCGTCTTTTTTCCGCTGTGTGAAAACTAAACCTTAACTGCAGGAATATGCTTACTCAGATTTGTTCTTTACTGATTATCTCTCTCTCTCTTTCTCTTTTCCTATCTTTACTTCTCCTCTGTGTACCCTGGCTAAGATATGGACAAGCAACTCCATTGATTTCTGTCAGTCCCGAAATACTGTCTCTCTGGTTGGAAGTGAAAATATGTTATTGGTCTGATCTCAGTCAAGCGTGTATATTTGCACTAGAAGGGATCTTGTGCCATGATTTGGATGTGCGGAGGAAGAGAGAGAGAGAGGACAAGCTGGGACGTTTGAGGTTGAACAGAGAAAGAACACAAGCCTCATTTACCATGTTCTCTGGTCCTGGGCTTTTCTTGTTAAATTATGCAGATAATGGCAGTCCATTGGTGTCCAGGCCTGCTGTGGGGACATATGGCCTCCTCCGAGAGCTACAGACAGGAACTATGACACCCTTCACCATATGTGCAGCGTCTCCGGCTCTCGACTTCACTCGCACAGGAACTCTCCTCTGTCACTTGCTTTTGGACCTCTCTCCCATGTCCGACTGTCAAAGCCAGTCACTGTCATCGTCTCCCCCCTTTCTATCTGGTGGCATGAAGTATTTCGGGCCACTCAGACGGCTTGGACGCATGCCCAATATCGCAGGGACATCTGGGCACTTTTGGCTGCCAAGACTATGTCGAGTCTCCATGGTCCTTGGTATTGGGGTCACATTTCTAAAGACTGATGGGCAACCTAGGCATCACGACCAGGAGGAGACAAAGCAGAGGAGAAAACCTGGATCTAAATGTCACTTCTTGCACAGGCCTGTTTTCTCCAATGACAGCCTGAGCAACTGTGGCGACAGAGTAATCCTGAATGCTGAGCTTGATATAGTGCTGGAGCTCAATAGCAGACAGTGCTTGACAGGTCCTCCAGCCGGGCCATTACGGCAGCACAGCAGTCAGGAGAGAAGGAATCAGGTGGACCTGCAGCAAGAAGTAGGTTACATTTACATGAATTACAGACATGTTCCCACCTCTCGCGCTGCCCCTCAACCCCCCAGAGACCTGAGAAGAGACTTTGGAAACACAGTTAAAATTACAAACAATGTTTGTGTTGTTTCGAGTTTGCTTTCTTAATGACATGGCTTAAAGGGTTCATACATGTTCAACATTTTATAATTTTCCCTGATGTTCACTTTTATAATCTTACTTAAGGTTACTTCTAAAAAAAAAACCAAATGTTTAGTCTAAAGGTTCGTGTGACAATTTTATATTTTGTCTACCCTGATTCAGTACAGTAAGCCTACTATAAGTGTTTATATTTTAGACCGGGCGGGATGGTTTTTGTGGGAAATTGTGTACATATGTCACTTGCCCGTGCGTGTCTTGTCTTATCCATAAATAGAGAAAAGTTGCTCCTGCTACTTTGATGGATGTATGGTGTGGAAGTAACTTTGCAGATGTTGTTTATGCTCTAACATCAACATTACACACTAACTAAAGTTAAAAAACTGAAATCATAATCAACCACCCCTTTAAAACCATAGCTACAAGAATGGGCCATTTGATGACATCCAAAAGAGGATAAAATTATAAGTGGATAAAATTATAAGTGAAAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_08485645_08496381.mRNA True 1799 mRNA 0.44 9 8485428 8496865

Neighbor

gene id symbol gene type direction distance location
CI01000054_08419492_08424760 KHDRBS1 coding upstream 60507 8418619 ~ 8424921 (+)
CI01000054_08378811_08396034 PPP1R10 coding upstream 89206 8378715 ~ 8396222 (+)
CI01000054_08377415_08378038 NA coding upstream 106739 8377125 ~ 8378689 (+)
CI01000054_08362528_08374374 ABCF1 coding upstream 110467 8362528 ~ 8374961 (+)
CI01000054_08336243_08350281 BAG6L coding upstream 134514 8336243 ~ 8350914 (+)
CI01000054_08675009_08686170 KPNA6 coding downstream 178144 8675009 ~ 8686679 (+)
CI01000054_08695322_08702750 TXLNA coding downstream 198457 8695322 ~ 8703309 (+)
CI01000054_08704697_08709175 EIF3I coding downstream 207832 8704697 ~ 8709349 (+)
CI01000054_08725294_08727378 NA coding downstream 228299 8725164 ~ 8727830 (+)
CI01000054_08771624_08790335 NA coding downstream 274696 8771561 ~ 8790922 (+)
G233305 NA non-coding upstream 180980 8304082 ~ 8304448 (+)
G233297 NA non-coding upstream 193619 8291607 ~ 8291809 (+)
G233262 NA non-coding upstream 200875 8284276 ~ 8284553 (+)
G233254 NA non-coding upstream 219910 8264318 ~ 8265518 (+)
G233233 NA non-coding upstream 363728 8121096 ~ 8121700 (+)
G233335 NA non-coding downstream 24853 8521718 ~ 8522154 (+)
G233337 NA non-coding downstream 29969 8526834 ~ 8527577 (+)
G233338 NA non-coding downstream 31012 8527877 ~ 8528174 (+)
G234433 NA non-coding downstream 64732 8561597 ~ 8561807 (+)
G234452 NA non-coding downstream 76020 8572885 ~ 8573093 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 155840 8325126 ~ 8329716 (+)
G233306 NA other upstream 180479 8304599 ~ 8304949 (+)
G233024 NA other upstream 875535 7567523 ~ 7609893 (+)
G232870 NA other upstream 1596925 6887912 ~ 6888503 (+)
G232659 NA other upstream 2109534 6374850 ~ 6375894 (+)
G235560 NA other downstream 1891271 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 3068111 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 3136111 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 3151114 11647959 ~ 11649495 (+)
G236874 NA other downstream 3316823 11813688 ~ 11816475 (+)

Expression


Co-expression Network