CI01000054_08652832_08667152


Basic Information

Item Value
gene id CI01000054_08652832_08667152
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8652789 ~ 8668929 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_08652832_08667152.mRNA
ACCTCCCTCTTTATCTGTCTCCCTTCATGTGGAGCCAGCAAGGTGGCACAAGAGATAGCACACTGTAAGCGTATAGTTGAGAAATTTGACAGAGAGAGACGGTCCAGCTGTGCTAGATATCACAAAAGCATGGTGCTAGTATTGCTAGTTGGGTGTCACAACCACCAGGCACCCAGATAATGTGAGATGTCAGTTTGAGTGGCAGACTTTGATACTATAATTGGGTGTTTTAAATGAACTCCAGGACATGGATTTAAAGGGATAGTTCACCCAAAAATGAAAGTTCGGTAAACCTGTATGTTGTTATTTTGTTTCCATGAAACACAAAAGGATACATTTTGAATAATCCTAGCACGCTTTTCCATATAAGGACAGTTCATATAGTGAACATGTCTGTCTATCACTCCCAAGCAAAGAAGTACACTTTAGCATATTTTAAAAAGAGTACTTAAATGTGAATCGAATGTATTGTTTTTGGACACTTAATTTAATGTTATTTGCAATTAAATGAAAATCTATTATAGTTTAAATTTATATTAAATACAATTAGCTGAACTTTAGAGTGCTTTTTTGACCCACTTAAGTAGGACTTAAGTACAGTACATCTTAAATGTAATTTCATAATTACTATATTGTCTTTGAAATATGGATAAAGTCTACTGCTGAATGTACTGACAAGCATTTATGGAAAACTAAAATATACTTTAGTGTCATTTCTATTGAAACTTGTACTTCATGCATTTGAATATTTGTAATTACACATTTGAATCAAGTATAATTTACATGTGCTTCAGTATGTTATAGTCAGCACATTAAAATAAGGGTACTTCTTTAAAAATTATTATTGATTTAAAATGTACTTTGAAGTATAACTTTTAATTTGACATTATTACAAAGTGCACTTTTTAAAAGTATACTTAAGTGTGTTAAGAAACATAGGGCCTGTCCAAATACCCACACTTGCAGTCTTTGCACTTGACCACTTGTCTACTTACATGACGTATTTCCTGCATTCAGTTATACTTACATGACGTATTTCCTGCATTTGGCCCAAGTGTTCTATGGGCCTGAAGATTGCAAGTGTGCGTGTAGAATTTCTTACCCGATGGGACTTAGCAAGTGCGAAAATGTTAGTCCAGGTTGCAGCAGTGGTTCTCACTCTTGTTTTTGTTCTTTTAAGAACTTACCACAGAACATGGCGACACAATGACACAACTGACCTAACTTTGATTGCTGAATTTCGGATATGTGTAATATATTTTCATAGAAACGTGGTTTGTGAAGTTTTTGTCCGTCTAAGAATAATATGCCATTCTGTTATAAGATTTAAATGTATATTAAATGTATATTTAAATTAATATTATATTATTTGTGTCACGATCATCAGCTGGAGTGCCCTTGATAGCCACCAGAGGGCTCTCCACCCCAGACTATTGTCATTCCCTCACAAACTACATTTCCCAGAACTCACTGCCCAGAATCATTGTCCCTGACTGTTCTCAGCTGATTCTTATTACCTTGTCAGTCCCTGCCTATATAAGCCTGCTCACTCTGTCATTCATTCTGAAGTCTTAAATGTGTCTAACTGCATTTCTGAGCCATTGTATCCTGGTTTTCCCCATGTCCTGGTTCTTTTGATTTCTCTTATTTGCCTCAGCCATGAACTCAGATTGTTTGATTGTATATGACCTTTGCCTGGATTTGGATTACGATTGTGGTTTGCCCTTTTAATAAATACTGCGTTTGGATCCTCAACCTTCATGTCTCGGAGCAGTATATGACAGAAGACTTAGCGGCTATGAATCCAGCACTAAGAATCATCCACTTGCGTCAAGGTAATCGATCTCTCAAGGACCACATCCAGGATTTTCTAGAGACTGCAAATTTCTCTGACCTCCCAGACTACGCTCTCATTGATTTCTTCTGTTATGGACTCAATGAACACTATCAATCCAAACGGATCCGTCATGGTCCTCAGTTTCTGGTCCTTCTTCACTTTTGTCGGAGCCATGGTCTGGTGGGGTGGGAGCAGATGCAGGGCTGTGTGGAGGGCAGGTGCGCTCCACTCTGCAACAGTGGCCACCAGAGAAACCCAGCGGCTGTTGCTGCTGCTGCAGTAAAAAAGGCAGCCCCAGGAGGAGAGCTTTTTATAGCAGATATCCAGCCTGAGATCAGAGAAAACACAGAGGATACTGATGTAGGGATGTTGTTGCAGTATTTCCCTTCCTCACACATGATAAATGGCAGGTGCAGCTGGATTATCTGTGAATGTGCTGAAAAACAGTCAGGGAGACAAGAGGGATTCATTTCTGAGCATAACCTGTGGGCCGCCTGATGACTCCTCACAATGACGCCTTTTACAACCGATGCACAATAAA
>TU266491
TAAGCCTGCTCACTCTGTCATTCATTCTGAAGTCTTAAATGTGTCTAACTGCATTTCTGAGCCATTGTATCCTGGTTTTCCCCATGTCCTGGTTCTTTTGATTTCTCTTATTTGCCTCAGCCATGAACTCAGATTGTTTGATTGTATATGACCTTTGCCTGGATTTGGATTACGATTGTGGTTTGCCCTTTTAATAAATACTGCGTTTGGATCCTCAACCTTCATGTCTCGGAGCAGTATATGACAGAAGACTTAGCGGCTATGAATCCAGCACTAAGAATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_08652832_08667152.mRNA False 2378 mRNA 0.39 3 8652789 8668929
TU266491 True 283 lncRNA 0.41 1 8667110 8667392

Neighbor

gene id symbol gene type direction distance location
CI01000054_08574533_08590975 NA coding downstream 61497 8574480 ~ 8591292 (-)
CI01000054_08425960_08439362 NA coding downstream 213359 8425943 ~ 8439430 (-)
CI01000054_08400578_08406066 NA coding downstream 246723 8400531 ~ 8406066 (-)
CI01000054_08375424_08376756 NA coding downstream 275809 8375071 ~ 8376980 (-)
CI01000054_08353876_08358232 NA coding downstream 294557 8353376 ~ 8358232 (-)
CI01000054_08692653_08694052 NA coding upstream 23210 8692139 ~ 8694052 (-)
CI01000054_08710955_08718087 HDAC1, HDAC2.S, HDAC2, HDAC1.S coding upstream 41858 8710787 ~ 8718087 (-)
CI01000054_08721571_08723333 NA coding upstream 52079 8721008 ~ 8724208 (-)
CI01000054_08937312_08942587 LDLRAP1, LDLRAP1A coding upstream 268383 8937312 ~ 8942587 (-)
CI01000054_08953766_08966617 TMEM57, TMEM57A coding upstream 283205 8952134 ~ 8966617 (-)
G234926 NA non-coding downstream 11614 8640541 ~ 8641175 (-)
G234911 NA non-coding downstream 54390 8598104 ~ 8598399 (-)
G234899 NA non-coding downstream 80111 8572436 ~ 8572678 (-)
G234424 NA non-coding downstream 98206 8554384 ~ 8554583 (-)
G234410 NA non-coding downstream 109546 8543036 ~ 8543243 (-)
G234935 NA non-coding upstream 21382 8690311 ~ 8690595 (-)
G234936 NA non-coding upstream 36825 8705754 ~ 8706067 (-)
G234946 NA non-coding upstream 64482 8733411 ~ 8733740 (-)
G234969 NA non-coding upstream 97516 8766445 ~ 8766674 (-)
CI01000054_07165957_07169539 HEYL other downstream 1481116 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 1998776 6628082 ~ 6642160 (-)
G232274 NA other downstream 3443549 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 3980556 4670151 ~ 4681361 (-)
G231645 NA other downstream 4669966 3981847 ~ 3982823 (-)
G235216 NA other upstream 579110 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 814218 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 1194392 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 2134942 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 2202175 10871104 ~ 10881495 (-)

Expression


Co-expression Network