CI01000054_08675009_08686170 (KPNA6)


Basic Information

Item Value
gene id CI01000054_08675009_08686170
gene name KPNA6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8675009 ~ 8686679 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_08675009_08686170.mRNA
ATGAAGAGTTCAAATCAAGCTCTTTATTCTCACTTGACAGAGCCTTCAGGAAGTCCTGCGAAGGATAATTTCAGGATGAACCGCTATAAGAACAAAGCACTCAACCTGGAGGAGATGCGTCGGAGAAGAGAGGAGGAAGGCATTCAGCTGAGGAAACAGAAACGAGAGCAACAGCTGTTTAAGAGAAGAAATGTGGAACTGCTGGGTGAAGAAGGGGGAATGTTTGACAGTCCACTCATGGATTCCTACGTCTCCTCCACCACAGCCCCAGTGAGTTCAAACCTGAAATGCACAGTTTGCTTTCTCCCATTATATCACTTACAGGGTGAGGATGGAGTAATTACAAGAGACATGGTTGAAATGCTCTTCTCAGAAGATCCTGAACTACAGCTGGTCACAACACAGAGGTTCAGAAAACTACTTTCCAAAGAACCAAACCCACCTATTGATGAGGTGATAAGCACACAGGGAGTTGTGAATAGATTTGTTGAGTTTCTTCAGAAAAGTACAAATTGCACATTACAGCAAACAAAGTTTGTGATCGAGGCCGGTGCCGTACCTGTCTTTATTGAGCTTCTCAACTCCGAGTTTGAAGACGTACAGGAGCAGGCTGTTTGGGCTTTGGGGAACATTGCAGGAGACAGCGCTGTGTGCAGAGATTATGTGCTAAACTGTAATATCCTTCCACCTCTACTAATGCTGCTGACCAAATCAACTCGTCTCACAATGACCAGGAATGCTGTGTGGGCCTTGTCCAACCTCTGCAGAGGCAAAAGTCCACCCCCAGACTTTGAGAAGGTGTCTCCATGCCTGCCTGTGCTGTCCCGTCTTTTGTTCAGCAGTGATTCAGACCTGCTGGCTGATGCCTGTTGGGCCCTCTCTTATCTCTCTGATGGGCCCAACGAGAAGATCCAGGCAGTTATTGATTCAGGGGTCTGCAGGAGGCTGGTGGAGCTGCTCATGCACACCGATTACAAGGTGGCATCTCCTGCTCTGAGGGCCGTTGGAAACATTGTTACAGGAGATGACATTCAGACGCAGGTGGTGTTGAACTGCTCCGCTCTCCCCTGCCTACTGCACCTGCTCAGTAGCGCCAAGGAATCCATCAGGAAGGAGGCATGCTGGACCATCTCCAACATCACAGCGGGAAACAGAGCACAGATTCAGGCTGTAATAGATGCAAACATCTTCCCAGTCTTGATAGAAATCCTACAGAAAGCAGAATTCCGCACCAGGAAGGAGGCAGCGTGGGCGATCACTAATGCCACGTCGGGTGGCACACCCGAGCAGATCAGATATCTGGTGAATTTGGGCTGCATTAAACCTCTCTGTGATCTGTTGACTGTGATGGACTCCAAGATCGTGCTGGTGGCTCTGAATGGTCTGGAGAACATTCTCAGACTGGGCGAGCAGGAGGCCAAACAGAATGGCAGCGGCATCAACCCTTATTGTAGTCTCATAGAGGAAGCCTATGGGTTGGACAAAATCGAGTTCCTACAGAGTCATGAAAATCAGGAGATCTACCAGAAAGCCTTTGACCTCATCGAGCACTACTTTGGAGTAGAGGAAGAGGATGCCAGTCTGGCACCACAGGTGGATGAGAACCAGCAGCAGTTCCTTTTCCCCCAGCAGGAGGCTCCCATGGAGGGCTTCCAGCTATAACAAGCCTTCAGACTCTTCCCAGCCGCCCCCTGTCCTTTACACCCCTCCCCGCACCGCGTATCCGTACTAAAACATACGTCGGAAACACTCAGAGCGCAGTGATTGACATCTGGGTGAACCAAATTTCGACCCGCGACCCGTGACCCAGACTGATTTATTTAAACGATGAGGTGTGTTTTAAGAAGGGGAACCAATCCACTGACATGTCACACCCAAGAGAGAGTTGGATTTTAGTTTCTTTCAGTTCCCCCCCCCTCAATGATGCAGCTAAATAATCATCCCCCTCAGGTAGAAATCGTGGAGCTGTGCCCTTTTTTCTTTTTCTTTTATTTAAGGAAAGGTATTCTTCAGTTTTCCCGTTTCACTGAAAGATGAGAGAATCGTTTACTCATCTAATGAAAATCAGAAAATGCTGATCTTCATCCTTATCTTTTTGATCCTGGTTGGATTTTCATCAAGTGTTGCGTTGTAGAATTTCTTTCTTCTGTTCATTACTCATATTCTGGTAA

Function

symbol description
kpna6 Predicted to enable nuclear import signal receptor activity. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Orthologous to human KPNA6 (karyopherin subunit alpha 6).

GO:

id name namespace
GO:0008565 obsolete protein transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_08675009_08686170.mRNA True 2171 mRNA 0.48 14 8675009 8686679

Neighbor

gene id symbol gene type direction distance location
CI01000054_08485645_08496381 NA coding upstream 178144 8485428 ~ 8496865 (+)
CI01000054_08419492_08424760 KHDRBS1 coding upstream 250088 8418619 ~ 8424921 (+)
CI01000054_08378811_08396034 PPP1R10 coding upstream 278787 8378715 ~ 8396222 (+)
CI01000054_08377415_08378038 NA coding upstream 296320 8377125 ~ 8378689 (+)
CI01000054_08362528_08374374 ABCF1 coding upstream 300048 8362528 ~ 8374961 (+)
CI01000054_08695322_08702750 TXLNA coding downstream 8643 8695322 ~ 8703309 (+)
CI01000054_08704697_08709175 EIF3I coding downstream 18018 8704697 ~ 8709349 (+)
CI01000054_08725294_08727378 NA coding downstream 38485 8725164 ~ 8727830 (+)
CI01000054_08771624_08790335 NA coding downstream 84882 8771561 ~ 8790922 (+)
CI01000054_08908112_08917294 FNDC5B, FNDC5, FNDC5A coding downstream 221433 8908112 ~ 8917595 (+)
G234495 NA non-coding upstream 37845 8636936 ~ 8637164 (+)
G234490 NA non-coding upstream 54781 8619942 ~ 8620228 (+)
G234482 NA non-coding upstream 76832 8597970 ~ 8598177 (+)
G234452 NA non-coding upstream 101916 8572885 ~ 8573093 (+)
G234433 NA non-coding upstream 113202 8561597 ~ 8561807 (+)
G234536 NA non-coding downstream 86142 8772821 ~ 8773027 (+)
G234541 NA non-coding downstream 91482 8778161 ~ 8778376 (+)
G234543 NA non-coding downstream 92642 8779321 ~ 8779587 (+)
G234577 NA non-coding downstream 135055 8821734 ~ 8822062 (+)
G234602 NA non-coding downstream 193670 8880349 ~ 8880654 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 345421 8325126 ~ 8329716 (+)
G233306 NA other upstream 370060 8304599 ~ 8304949 (+)
G233024 NA other upstream 1065116 7567523 ~ 7609893 (+)
G232870 NA other upstream 1786506 6887912 ~ 6888503 (+)
G232659 NA other upstream 2299115 6374850 ~ 6375894 (+)
G235560 NA other downstream 1701457 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 2878297 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 2946297 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 2961300 11647959 ~ 11649495 (+)
G236874 NA other downstream 3127009 11813688 ~ 11816475 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014868 kpna6 coding NC_007130.7 CM002903.2 29861859 ~ 29887629 (-)
bowfin (Amia calva) AMCG00011027 kpna6,LOC107584279,LOC107745716,LOC107562870 coding CM030133.1 CM030133.1 8109323 ~ 8120492 (-)