CI01000054_08695322_08702750 (TXLNA)


Basic Information

Item Value
gene id CI01000054_08695322_08702750
gene name TXLNA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8695322 ~ 8703309 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_08695322_08702750.mRNA
ATCAGCAATGCAGAGAAGGGAGATGGAGGATCCTGTTGCTGATAGCAGTGCAGATGATACGGAGGAGAGCACCGCGGCATCTGAGATGACCAACAGCCCTAAAGAAACCGAAACACAGCCGGACGGCACACCAACCAACAGTGCTCAGACTGATGAAGGCTTGGCAGAGGCTGGAGCGCTTTCTTCTTCCCGTGACATGGCTGAGGAGCTGAGCAGACAGCTGGAGGACATTCTCAGCACCTATTGTCATGAGCATGGTGGCGTTGGCAGCGAAGATGTGGCAGTGACCAATGGCCAGCCTGATGGTGTGGAAGTGAACGGGCTGTCTGAGAAGGAGGACGGCAAACGGGAGGAGGCCAAACTGAATGGCAATGGATGCGCGGAGAAGGACCAGAAGAAGCTGCAAGAGAAGAAGAAAGTGAAGGGACTTGGCAAGGAGATAACCCTTCTAATGCAGACTCTCAACACACTGAGCACTCCAGAGGAGAAGCTGGGTGGTCTCTGTAAGAAGTATGCTGAGCTGCTAGAGGAGCACCGTAACTCTCAGAAACAGATGCGGGCTCTGCAGAAGAAGCAGACGCAGCTGATCCAGGAGAAGGACCACTTAAGAAATGAGCACAGCAAGGCCATCCTGGCACGCAGCAAGCTGGAGAGTCTCTGTCGAGAATTGCAGAGACACAACCGCACACTTAAGGAGGATGGTGTGCAACGTGCCCGATTGGAGGAGGAGAAAAGGAAGGAAGTGACCTCACATTTCCAGGTGACACTGAATGACATCCAAGCTCAGATGGAGCAGCACAACGAGCGTAATGCAAACCTAAGACAGGAAAACATGGAGCTGGCTGACAAACTGAAGAAACTTATTGAGCAGTACGAGCTCAGAGAGGAGCATATTGACAAGGTGTTCAAGCACAAAGATCTGCAACAGCAGCTGGTAGATGCAAAGCTTCATCAGGCACAGGCACTTCTCAAGGACTCAGAGGACCGTCATCAGAAGGAGAAAGACTTTCTCCTGAAAGAAGCAGCCGAGTCTCAGAGGATGTATGAGCTCATGAAACAGCAGGAAGTTCATCTGAAACAGCAGCTCTCATTGTACACAGAGAAGTTTGAAGAGTTTCAAAACACACTTTCCAAAAGCAATGAGGTGTTTACAACTTTCAAACAAGAGATGGAAAAGATGACCAAGAAGATTAAGAAGCTGGAGAAGGAAACAACCATGTACAGATCACGATGGGAAAGCAGTAACAAAGCTCTGCTGGAGATGGCAGAGGAGAAAACACTACGAGACAAGGAGTTTGAAAGCCTGCAGGTGAAGGTGCAGCGACTGGAAAAACTCTGTCGTGCATTACAGATAGAGCGTAATGAGCTGAGTAAGAAGGTTCAGGGTGTCTCCACAGGCGTTGAGAATAAGCCAGAAACAGAGACGGGGTCACCACCTGAAGCGATAGACTCGGAAGAGGGCAGCCCTGTCCATCAGAACAGCCCAGAGACTCCACAAACCGCTTGTAGCCCGGCGTGCCACTGCGGTCCAGATCTGGAGGCCGAGAGTCACAGAGAGACCCCCGACCCTCCACCAGCAGTCGGCGTCTCTGTCGTTTTCTGCATCTGCGTCTGTGACAGAACTGCTGACTCGTCTGCTCTTGGGGGGTTTTCATTGTGTCAGGGAAGATTGTGCCTTCAACATGATTCCTATGCTGCGTTTATACTCTTTGATTTTTATGTGGCTTGCTTTATCCCACCTTATTCTCAAGAAAATTCCATATTTGCATTTAGAGGGGCATTGATGTTGCTGCTGTCTTGGAATGCTCAGTGTTTGTCCACTAAATGCTTGTCTCTTTTCAGTTTGGCTGAAAAAACGTAAAGAACAGATGGATTGCTGTAATTGGGGGAAAATTCCTTGCCATGAAACAGCAGTTGTAATGTGACATGCTTTTTCTTTGGGTGTTTTTATTTCATTTCTCGCCTTAAATTGTATTAGGTAAATATGCTTGTGCACTTCCCAACCACTCTCTATTATTTCTTATAAATATTCTGCACCAAACAAAGAATGTATGATTTATTATTCATCACTTCTCAGAGTTTAGAAATGTAGACGTACGGTTAAGGTTAACATTGTTTTGAGTTTAAGGGTCATCTAATCTGAACCCATATTTCTTTATGCTTTTGCACAACACTTGAATTTATCGCATATATTTTTAACTGAAGTTTACACCATCTTTAAACACCACTAGAATCTTTCAGATAATATATCCAGCATTGTAGATACATTCCTTTAACTCATTCCATTAACTTCTAATTAGGAATGTGCACTTAAAGATGTCATGACCACTGAAGGATTTCATTCAGTGTGTGATTTCAGTTTGGACGGTTTTCATATTATTTCAGATACTGATCACATGGCTGTTTGCGTTAGTGGCTTA

Function

symbol description
txlna Predicted to enable syntaxin binding activity. Orthologous to human TXLNA (taxilin alpha).

GO:

id name namespace
GO:0019905 syntaxin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_08695322_08702750.mRNA True 2420 mRNA 0.46 11 8695322 8703309

Neighbor

gene id symbol gene type direction distance location
CI01000054_08675009_08686170 KPNA6 coding upstream 8643 8675009 ~ 8686679 (+)
CI01000054_08485645_08496381 NA coding upstream 198457 8485428 ~ 8496865 (+)
CI01000054_08419492_08424760 KHDRBS1 coding upstream 270401 8418619 ~ 8424921 (+)
CI01000054_08378811_08396034 PPP1R10 coding upstream 299100 8378715 ~ 8396222 (+)
CI01000054_08377415_08378038 NA coding upstream 316633 8377125 ~ 8378689 (+)
CI01000054_08704697_08709175 EIF3I coding downstream 1388 8704697 ~ 8709349 (+)
CI01000054_08725294_08727378 NA coding downstream 21855 8725164 ~ 8727830 (+)
CI01000054_08771624_08790335 NA coding downstream 68252 8771561 ~ 8790922 (+)
CI01000054_08908112_08917294 FNDC5B, FNDC5, FNDC5A coding downstream 204803 8908112 ~ 8917595 (+)
CI01000054_08969979_08973590 NA coding downstream 266670 8969979 ~ 8973666 (+)
G234495 NA non-coding upstream 58158 8636936 ~ 8637164 (+)
G234490 NA non-coding upstream 75094 8619942 ~ 8620228 (+)
G234482 NA non-coding upstream 97145 8597970 ~ 8598177 (+)
G234452 NA non-coding upstream 122229 8572885 ~ 8573093 (+)
G234433 NA non-coding upstream 133515 8561597 ~ 8561807 (+)
G234536 NA non-coding downstream 69512 8772821 ~ 8773027 (+)
G234541 NA non-coding downstream 74852 8778161 ~ 8778376 (+)
G234543 NA non-coding downstream 76012 8779321 ~ 8779587 (+)
G234577 NA non-coding downstream 118425 8821734 ~ 8822062 (+)
G234602 NA non-coding downstream 177040 8880349 ~ 8880654 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 365734 8325126 ~ 8329716 (+)
G233306 NA other upstream 390373 8304599 ~ 8304949 (+)
G233024 NA other upstream 1085429 7567523 ~ 7609893 (+)
G232870 NA other upstream 1806819 6887912 ~ 6888503 (+)
G232659 NA other upstream 2319428 6374850 ~ 6375894 (+)
G235560 NA other downstream 1684827 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 2861667 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 2929667 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 2944670 11647959 ~ 11649495 (+)
G236874 NA other downstream 3110379 11813688 ~ 11816475 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014867 txlna coding NC_007130.7 CM002903.2 29834440 ~ 29853435 (-)
bowfin (Amia calva) AMCG00011025 LOC107562872,LOC107687085,LOC107576061 coding CM030133.1 CM030133.1 8090961 ~ 8099615 (-)