CI01000054_08725294_08727378


Basic Information

Item Value
gene id CI01000054_08725294_08727378
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8725164 ~ 8727830 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_08725294_08727378.mRNA
TCATATATTGAAACAGTCTCTTCTTTTTCTCCATGGAGAGAGTTGGGGGTTGGGTGTGATGGAGTGAAGAGGAGGAGGAGGGGGGAGTTTTCTTGTGCCCGGAGCTTTTGTGATGTGGTTCATTTTCTTGATGACGGGTCAGGACACATCACCTCATCATCCATGCGTCAGACTCTCGCTTTCCCCTTTCCTAATGGCTGAAAGGCCTTTATTGTTGGCAGATCATTCGAAAGTTGGAGGGAAGAGTAAATGGCCAGCGTCCTCCACAGTGAGGCCTGCAGTTCACACCTTCCATCCAGCAGAGAGTCTTCTTTGGCCTGGTGTTTTAATCCCTGTGGAGCTGCATGGCCAGACAACAAATAGCTCCTGCAGGAGCAACATCTCGCACATGAATGTCAATGGGTGTGTTGATATGCCAATGATAGGGACATCAGACCGGGCAGGGCAGAACCACCGGCAAGACTCCATGACTCAGCAGAAGACACTGCACTCAGGGTCTCCTCAGGGTGTGAGAGGTGCGAGCTTTGAGACGGAGTGCACTTTTAAACTTTAAACTCAGCTGTCTGGAAGAGAAGTCAGAACATGTTGTTGCTCCGGTGTCCTCTGAGCAAACTTCGCCCCTGATGGAAGTGAGAGCACGGGGGAGGACATCAAGGGGAGGTGCGTGACCCACTCCAAACTCTGTCCATTTCTGATTCTTAATAGCATATCTCTCTCTCTCTCTCTTTAAGATACGACCTAGGGGCAGTTGACTGGTTTCTGCTATACTCAACGTGGGGCATCTTATCTCTTTCTTGTTTTTTTCTTCACAACACTCAATGGCCCTTTTTGTTTGGTTGCCCAGATTTCATGCCTGAACACAGAGTGAGATTTATATCCTCAAAAGGCCCTATTGTTCTCCATTCAGAAGGCAACTGATGAGCATCACAAGCTGGGATGAGGGGAGGGTAAGGAGAAAGAGAGAGAGAGAGCCAGAAGAAGAGCGATGTAACATTGTATTGCTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_08725294_08727378.mRNA True 1005 mRNA 0.49 2 8725164 8727830

Neighbor

gene id symbol gene type direction distance location
CI01000054_08704697_08709175 EIF3I coding upstream 15815 8704697 ~ 8709349 (+)
CI01000054_08695322_08702750 TXLNA coding upstream 21855 8695322 ~ 8703309 (+)
CI01000054_08675009_08686170 KPNA6 coding upstream 38485 8675009 ~ 8686679 (+)
CI01000054_08485645_08496381 NA coding upstream 228299 8485428 ~ 8496865 (+)
CI01000054_08419492_08424760 KHDRBS1 coding upstream 300243 8418619 ~ 8424921 (+)
CI01000054_08771624_08790335 NA coding downstream 43731 8771561 ~ 8790922 (+)
CI01000054_08908112_08917294 FNDC5B, FNDC5, FNDC5A coding downstream 180282 8908112 ~ 8917595 (+)
CI01000054_08969979_08973590 NA coding downstream 242149 8969979 ~ 8973666 (+)
CI01000054_08975450_08984634 E2F3 coding downstream 247529 8975359 ~ 8985175 (+)
CI01000054_09151300_09164780 NA coding downstream 422955 9150785 ~ 9164938 (+)
G234495 NA non-coding upstream 88000 8636936 ~ 8637164 (+)
G234490 NA non-coding upstream 104936 8619942 ~ 8620228 (+)
G234482 NA non-coding upstream 126987 8597970 ~ 8598177 (+)
G234452 NA non-coding upstream 152071 8572885 ~ 8573093 (+)
G234433 NA non-coding upstream 163357 8561597 ~ 8561807 (+)
G234536 NA non-coding downstream 44991 8772821 ~ 8773027 (+)
G234541 NA non-coding downstream 50331 8778161 ~ 8778376 (+)
G234543 NA non-coding downstream 51491 8779321 ~ 8779587 (+)
G234577 NA non-coding downstream 93904 8821734 ~ 8822062 (+)
G234602 NA non-coding downstream 152519 8880349 ~ 8880654 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 395576 8325126 ~ 8329716 (+)
G233306 NA other upstream 420215 8304599 ~ 8304949 (+)
G233024 NA other upstream 1115271 7567523 ~ 7609893 (+)
G232870 NA other upstream 1836661 6887912 ~ 6888503 (+)
G232659 NA other upstream 2349270 6374850 ~ 6375894 (+)
G235560 NA other downstream 1660306 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 2837146 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 2905146 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 2920149 11647959 ~ 11649495 (+)
G236874 NA other downstream 3085858 11813688 ~ 11816475 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014864 NA non-coding NC_007130.7 CM002903.2 29750328 ~ 29796288 (-)