CI01000054_08953766_08966617 (TMEM57, TMEM57A)


Basic Information

Item Value
gene id CI01000054_08953766_08966617
gene name TMEM57, TMEM57A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8952134 ~ 8966617 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_08953766_08966617.mRNA
TTCCTGGTCGTTTGGGCGCTGGTTCTGCTGGCCGATTTCGTGCTGGAGTTCAGGTTCGAGTATCTGTGGCCTTTCTGGCTCTTCATCAGGAGTGTTTATGATTCCTTTAGATATCAGGGATTGGCGTTCTCTGTGTTCTTTGTGTGTGTCGCATTCACATCAGACATCATCTGCCTCCTGTTCATCCCCAAGCAATGGCTGTTCTTCGCCGCCAGCACGTACGTCTGGGTACAGTACGTGTGGCATACAGAACGAGGTGTGTGTCTGCCCACTGTGTCTCTCTGGATTCTTTTTGTCTACATCGAAGCAGCTATCCGGTTCAAGGATTTGAAACATTTTCATGTAGATCTTTGCCGTCCATTTGCAGCTCATTGCATTGGCTATCCAGTGGTAACACTGGGCTTCGGCTTCAAGAGTTACGTGAGCTATAAGATGCGTCTGCGGAAGCAAAAAGAGGTGCAGAAGGAAAATGAGTTCTACATGCAGCTTCTACAGCAGGCCCTGCCACCAGAACAACAGATGCTTCAGAGACAGGAACGAGAGGCAGAGGAGGCCACCTCAAAAGGAATGTCTGAAGCAGACTCTGTGTTAGTTGCTCAGAACGGCACTGCTATTACCAAGAAACTGCCGATGTCTCTGCCTGAACTGGAGTATAAAGAGAAGGGGAAAGACGGGGGAAAAGACAAAAAACAGCAGCAGCACAGCATAGGAATAAACAACAACATCTTACAGACTGTGGATGCTAAACTACAGGACATTGAGTATATGGAGAACCACCTAAACACTAAGAGACTCAACAACGAGCTCAGCGGCAGCGCAGAGAACCTGTTCCTAAAAGAGGAGGTAGGCGGTGGAGGAGGAAGCTCTGCCCCCTCCAAACATTACAAAAACTCCTCCCCCCATAGCCACAACTCCACCAATGGCAGCGTACCATCCTCCTCAACCAGCAGGAGTGAAAAGAAACAGAAGTGTGCAGGGAAGAACCTTGCACCTCACAGAGATCTGATGGAGAACTGTATACCTAACAACCAGCTCAGTAAGCCAGATGCATTAGTGCGGCTTGAGCAGGACATAAAGAAGTTGAAGGCTGACCTGCAGGCGAGCAGACAGGTGGAGCAAGACCTGCGCAGTCAGATCAGCTCTCTGAGCAGTGCCGAGAGGAGCATGCGCTCTGAGCTGGGGCAGCTCCGCCAGGAAAATGAGTTGCTGCAAAACAAGCTTCATAACGCTGTGCAGGCCAAGCAAAAGGACAAGCAAATGATTGTGCAGCTGGAGAAGCGGCTCAAGGCAGAACAGGAAGCGCGAGCCGCAGTGGAAAAGCAGCTTGCAGAAGAGAAGAAAAGAAAGAAGATGGAAGAGGCTACAGCTGCACGTGCTGTCGCTCTGGCAGCTGCCTCCAGAGGGGAATGCACGGACTCGCTGAGGAATCGCATACGTGAGCTGGAGTCGGAGTGCAAGAAGCTCAATCACGACATGAAGCTAAAGGAGGAACAAATCAGAGAGCTCGAGCTCAAAGCGCAAGAGTTGCGTAAATATAAGGAGAATGAAAAGGACACAGAGGTTCTAATGTCAGCACTGTCGGCCATGCAGGACAAGACCCAGCACTTAGAGAACAGTCTGAGTGCTGAGACCAGAATCAAACTGGATCTTTTTTCAGCACTCGGAGATGCCAAGCGACAGCTAGAGATTGCTCAAGGTCAGATTTTGCAGAAGGAGCAGGAGATAAAAGAGTTGAAGCAGAAGATCGCAGAGGTCATGGCGGTCATGCCCAGCATCACCTACTCGGCAGAGACCAACAACATGACCCCTGTGACCCCACATTACTCCTCCAAGTTCATGGACACCAGTCCATCCAGCTTGGACCCCAATGCCTCCGTCTACCAGCCGCTCAAGAAGTGAATGTTCACACACACGGCGTCCACTTTGCTCTTTGATTTGTCTAAAAGTTCAGTATGCAAACCAATAGGATGGGGTTGTATTTTTGTTTGATTTACCCCTCCTCTGACTCTTCTTTGTTATTGCTAAAAATAAGTGGAGGATTAGAGGGAGAAAAATGGATGTCACATTAACAAGAACTGCCCTCCTGGTGTTTAAGGTTATTTTTGAACCTAAATTCTTTTCTTGGTAATGGCACTTCAGTCTGTTGTGGTTCTTTTGTCATCCTAAATCTGTTTTGTGAGGTCTTAATGAAGACCTTTCACGATTTTATTAGTACCTCCTCATCTTTGTGTTGAATCTGAACAGTTTTATGTGCCAGATAATGGTGGCATGACTTCTTTTACTTCCCTGGTGTAAACGTACATATTTAAGTTCATTGAATGTAAAAAGAAAAGGGAAAAACGTATTGAAATGAGGCACGAGTATTTGTGATGGAAAAAATGTCGTGTTTGTTGCAATGGAGTGATTAAGAATGCATTTCAGTTTAATTATGACCATAGTATTGTGCATCTGTTTTTGGGGAGGTAAAAAATCATTTCATTACAGATGGATCTGAATTGGATATATTTTTGGGTTTCTATAAACCAAATTTTCCGTTCCTCCCGATGCTGTTTTCCAACATGTCGAAGACACGATAAAAACCCACGTGTTTAAAAAGGGACTGATCTTCACGTTGTATTTGTTGACAAAAATGCTGCATAAATATTTGGGAATGTTGTTGTATTTTGCAGTCAATGCAAGTCCTTTTTGTTACCGGACAAAATTGAAATAGAATTTAGTTGAAACCAGTTGAAAAGCTGAACATATGATGTCTTGTTTGCCAGTTGTTATGTTACTCAGTGCCTTGAATTATCTTGTTTAATATATTCTCTCACACCTCCCATGCCATGTTCACCCACTCCTAGAATCAATCTGATTGGTCAGCATACCACATGACTTGTTTTTCCCAAGCGTGGCATTTAAAATCATCTGCCCTCTTGTTGCCATGTGTTCCGTGAGGAGAAAAAATGTACAGGTAACAGCAAGCCCACTTGTTATCAGTGGTCCACTATGTCTCTAATTTACATTAACATATTCATTGCATTTTATAATATTTGCTGAATGGTTTGATTTTGGTCAAACGTGCCAATTTTTTCTCCCCTGCACCATTTAATTTCATTGAGGATAATGCAAACTATACATGCATCATTTTATAGAGGAAGTCACTGCAGATAACACCTAAAATCAATCCATTAATGTTTCATTTTCATTAAAAATTCTACTTCACATTTCTTCTTCATTGGTTTAAGGATTGTGTCATGATGCAGGCAGAATATGCTTGTTTGGTTTAGTCCTTGTTTTACAACAGGGATTTCTTTTTTATTTGTCTACCTTGGGAAAGTATTACTGTGGATTGCATTTGGTGTTTTTATGGTAAACTTTGTGGAGAGTAAAAAAAACATGCCTTTGTTTCTCATTGTTTGAATTTTTTTAAAAGAACCAAGCTAAAGTGTGTGTGTGTGTGCGCAGAGGTGTAAAAGTACAAAGGGGGAAACTTAATTTTTACTCCTTTTAATGTCATTTGGCCTTCTAAATACTTGATAGCATAATAAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_08953766_08966617.mRNA True 3531 mRNA 0.43 10 8952134 8966617

Neighbor

gene id symbol gene type direction distance location
CI01000054_08937312_08942587 LDLRAP1, LDLRAP1A coding downstream 9547 8937312 ~ 8942587 (-)
CI01000054_08721571_08723333 NA coding downstream 228052 8721008 ~ 8724208 (-)
CI01000054_08710955_08718087 HDAC1, HDAC2.S, HDAC2, HDAC1.S coding downstream 234047 8710787 ~ 8718087 (-)
CI01000054_08692653_08694052 NA coding downstream 258082 8692139 ~ 8694052 (-)
CI01000054_08652832_08667152 NA coding downstream 283205 8652789 ~ 8668929 (-)
CI01000054_09077309_09080163 NA coding upstream 110214 9076831 ~ 9080812 (-)
CI01000054_09218869_09223868 NA coding upstream 252015 9218632 ~ 9224119 (-)
CI01000054_09453616_09482480 LPCAT1 coding upstream 485492 9452109 ~ 9482723 (-)
CI01000054_09483912_09484282 MRPL36 coding upstream 517195 9483147 ~ 9484282 (-)
CI01000054_09488559_09488870 NA coding upstream 521659 9488276 ~ 9488870 (-)
G235064 NA non-coding downstream 39658 8897888 ~ 8912476 (-)
G235061 NA non-coding downstream 56597 8894973 ~ 8895537 (-)
G235060 NA non-coding downstream 57539 8894156 ~ 8894595 (-)
G235049 NA non-coding downstream 76594 8875272 ~ 8875540 (-)
G235041 NA non-coding downstream 88631 8863172 ~ 8863503 (-)
G235084 NA non-coding upstream 7396 8974013 ~ 8974310 (-)
G235080 NA non-coding upstream 7776 8974393 ~ 8974682 (-)
G235096 NA non-coding upstream 20484 8987101 ~ 8987407 (-)
G235097 NA non-coding upstream 21060 8987677 ~ 8987940 (-)
G235099 NA non-coding upstream 22280 8988897 ~ 8989099 (-)
CI01000054_07165957_07169539 HEYL other downstream 1780461 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 2298121 6628082 ~ 6642160 (-)
G232274 NA other downstream 3742894 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 4279901 4670151 ~ 4681361 (-)
G231645 NA other downstream 4969311 3981847 ~ 3982823 (-)
G235216 NA other upstream 281422 9248039 ~ 9248538 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 896704 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 1837254 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 1904487 10871104 ~ 10881495 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014112 maco1a coding NC_007130.7 CM002903.2 29303847 ~ 29333867 (+)