CI01000054_08969979_08973590


Basic Information

Item Value
gene id CI01000054_08969979_08973590
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8969979 ~ 8973666 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_08969979_08973590.mRNA
CTTTCAGAAAGTACATAAAGATGCCTGCAGTACTGAACCTCAGCAATGAGGTGGTCAAGATGAGGGCGGAGGTTAAAAGGGTGAGGGTGCTCCTCATCCGGAAACTCGGCCGTCAGATCACAGCCCTGGAGAAGAAGAAAGGAAATGAGGCAGCCGTAGAGAAGTTCCGCAGGCGAGCAGCGAAACTTCGTGAGGAGATCCGTGAACTGAAAGTTGTTGTTCCTGACAGCGTCACCAAGGCCGCCTTACAGAAGGACATCAGCTTTGACAAAGTGTGCCGGGATAAAGAGGCCAGCCTATCCGACCGGGCCATCGCCCGCATCGCCACACATCCACAGTTCAGCAAGAGAATCCAAAGCATAAAAGCAGCCATCAAAGCTTTCAAAGAGGAGAGAATAAATGCAAGAAAAGCAGAAAAACAAGCAATAGACAGAGCAGAAAATGTCATGTCGCACGGTAATGATGAAGATGATGTTGGTTCGGAGAAATCAAACGATGATGATGAGAAATTGAAAGAGGAGGAGAGTCGCAAAAAGACAGATGAACAGCAAGAGGAGACTGATGGTTCCTCACAGGAGAGCCAGAAGACGAGTCTGGAGACATTAAAAGAACAGACCAATCAGTGCCGGAAGGAAGAAACATTAACAGTTGAGGACTCATCTGAAACAGTGGCTGTCCCAATGGAGGTGATCAGGATGAGAAAGGAAGTGAAGAGGACAAGGGTGCTGATCATCAGTAAAATGGCAGAGCAAGTGGCTTCTCTGAAGAAGAAGAAGGGTCAGGAATCTGAGGTGAAGGAAAGCCAAGAGAGAGCAGCAGAAATCCTGAAAGAAATCAAGGCTTTAAGGAGTCTTAAACCAGATCAGGTGACCATGACAGCACTTCAGGAGAACGCTGAACTTGAGAAGGTTTTGCAGGACCCTCAGGCAAGCCCACTGGACAGAGCCATCGCACGTATCATCACACATTCCCGCTTCATCAACAAGCTCCAGAAGGTCAAAGAAGCCATTGAAGAAGAAAGAGCTAAGGCTGGTAAAGCTGAGTTGAAAAACACTGACAGACTAAACATAGCGGAGTCCAAGAATGAAGATGAGGAACCAGAAGAGAAAGATGAGGAACCAGAGGAGAAAGATGAGGAACCAGATGATGATGACGATAACGATGACAGCAAGGAGGAGGATGATGTAGTAGAGGAAAAATTGAAGAGTTTGTCCACTGAGATCCATAAGTCTGGTGTTGTAGAGCCGTCCGAGAGTAAAGACCCTGATGCTTTTGAATTACCACCATCCAAGATCATCACAACATCTTCAGAAAAATCCAAAGGGGATAAAAATAAATTAAAGAATGTAGAGGCCATGGTTCCAAATGTCCAAAGTTCTCCTGAAAAGTCTTCAACTGTAAGCAGCACAAAGTCTATGCCACTGAAGAACGTTAGTAAAGCAGTAGAGGAAAAATTGAAGAGTTTTTCCACTGAGATCCATAAGTCTGGTGTTGTAGAGCCAACCAAGAGTAAAGACCCTGATGCTTTTGAATCACCACCATCCAAGATTATCACAACATTTTCAGAAAACTCCAGAGGGGTCAAAGTTAAATCACAGAATGCAGAGGCCAGTGCTCCAAATACCCAAAGTTCTCCTGAAAAGTCTTCAACTCTAAGCAGCACAAAGTCTACGCCGCCAAAGAACGTTGGTAAAGCAGACAAAGAAATGGAGATCACCTTAAAGACACAAAAGAAACAAGACCTACCTGAGACCAAGAAGCTTGAGGCAGATGAAGAGAGCGATTTATCAGATGATGACGAGGAGGAGGAAGAGAAGGAATATTTCGATGACAGCACAGAAGAACGTTTCCATAAGCAATCGTCTCTGTCTGAAGACAGTGATGATGATGACTTCTTCCTGGGCAAAGTGAGCAAATTCAAGAAAAAGAAAAGCAACCCAAAACCTGACAAGGAGGCCACCAGCAAACCTCAGGAGACAAGCCTCGGCAAACTACAGTCTGTGTTTTGCTCAACTTTGTCCAAATCCAACGTCTCCTCTCAGAAAGCACAGTATAGGTCTCACAATGATGGGTCAAGACCTCCTCGATTCCAGAGCCAGAGTAAAGGTCCTGAGAGTAGGATGAAAACATCTCAATATAAAGGCCAAGACGTTGGCACTGATAGGAAGATGGGTTCTTTCAGACCCAACAGACAGACTTTTAATGTTGCTGGACAAAGGCAAGCAGGACCTTCAGGGGCAGGGTGGGGAAGGTCACAGTTTGAGCAGTATCAGAACCAGAATCTCAGAGGTCCACCTGGAAACATGTCAAAACCACCCCAGCAGTCCCTTCATCCCTCATGGGAGGCTAGCAGGAAAAGAAAGGAACAGCAGACGCAAATCACAGCATTCCAAGGGAAAAAGATCAGATTTGATGATGATGATTAAGAAAGGTCTGCTAAAGTTCATTTAATGCTTTCGTGTTTTGATTACTATGTTTTGAGCTATTCAGTGTGAATTTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_08969979_08973590.mRNA True 2502 mRNA 0.45 2 8969979 8973666

Neighbor

gene id symbol gene type direction distance location
CI01000054_08908112_08917294 FNDC5B, FNDC5, FNDC5A coding upstream 52384 8908112 ~ 8917595 (+)
CI01000054_08771624_08790335 NA coding upstream 179057 8771561 ~ 8790922 (+)
CI01000054_08725294_08727378 NA coding upstream 242149 8725164 ~ 8727830 (+)
CI01000054_08704697_08709175 EIF3I coding upstream 260630 8704697 ~ 8709349 (+)
CI01000054_08695322_08702750 TXLNA coding upstream 266670 8695322 ~ 8703309 (+)
CI01000054_08975450_08984634 E2F3 coding downstream 1693 8975359 ~ 8985175 (+)
CI01000054_09151300_09164780 NA coding downstream 177119 9150785 ~ 9164938 (+)
CI01000054_09232327_09233391 SOX4A, SOX4 coding downstream 258333 9231999 ~ 9234242 (+)
CI01000054_09437674_09440443 NA coding downstream 462677 9436343 ~ 9441827 (+)
CI01000054_09485610_09487896 NDUFS6 coding downstream 511575 9485241 ~ 9487967 (+)
G234606 NA non-coding upstream 37344 8932373 ~ 8932635 (+)
G234602 NA non-coding upstream 89325 8880349 ~ 8880654 (+)
G234577 NA non-coding upstream 147917 8821734 ~ 8822062 (+)
G234543 NA non-coding upstream 190392 8779321 ~ 8779587 (+)
G234541 NA non-coding upstream 191603 8778161 ~ 8778376 (+)
G234588 NA non-coding downstream 343 8974009 ~ 8974677 (+)
G234636 NA non-coding downstream 93912 9067578 ~ 9067907 (+)
G234641 NA non-coding downstream 102042 9075708 ~ 9075917 (+)
G234643 NA non-coding downstream 102906 9076572 ~ 9076797 (+)
G234652 NA non-coding downstream 115084 9088750 ~ 9089035 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 640391 8325126 ~ 8329716 (+)
G233306 NA other upstream 665030 8304599 ~ 8304949 (+)
G233024 NA other upstream 1360086 7567523 ~ 7609893 (+)
G232870 NA other upstream 2081476 6887912 ~ 6888503 (+)
G232659 NA other upstream 2594085 6374850 ~ 6375894 (+)
G235560 NA other downstream 1414470 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 2591310 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 2659310 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 2674313 11647959 ~ 11649495 (+)
G236874 NA other downstream 2840022 11813688 ~ 11816475 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014862 srfbp1 coding NC_007130.7 CM002903.2 29296191 ~ 29303788 (-)