CI01000054_09650064_09651286 (MED10, MED10.S)


Basic Information

Item Value
gene id CI01000054_09650064_09651286
gene name MED10, MED10.S
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9649807 ~ 9651286 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_09650064_09651286.mRNA
ATGGCCGAAAAGTTTGATAATCTCGAGGAACACCTCGAGAAATTCGTCGAAAACATAAGACAGCTTGGAATTATTGTCAGCGATTTTCAGCCCAGCAGTCAAACAGGACTCAATCAGAAACTAAATTTTATGATCACAGGACTGCAGGACATTGAGAAATGCCGACAGCAGCTTCATGATATCAACGTACCGCTGGAAGTGTTTGAGTATATTGATCAGGGTCGTAACCCTCAACTCTACACCAAGGAGTGCTTAGAGAGAGCGTTGGCTAAAAATGAGCAGGTCAAAGGAAAGATTGACACCTTGACTAAATTTAAAAGCCTCCTCATTTCTGAGCTGGGGAAGGTTTTTCCTGAAGAGATGGCTAAATATAAGGCCATTCATGGAGATGATCCTCCTTCATGATTTACCAGTGCCACGACACTTCAAACGCAAGATGTACATATGTTGATATTAATATAACATGTTTTTTAAGGTTTAATTCATCATTCAAATATGCAAATTTTTACAGCTTTTTCATCTTTGTATTTGCCTTTGTAATTCACAAGAATACGGATTGAAAACTGAGGGATATTTTGGGATTTCCTTGAAACAGTGAAAAGCTTTTTTTTCATGCATTGTAATTTTCGCAGCATAATTTTTTTATTTTTCCGTTGAATAAA

Function

symbol description
med10 Predicted to enable transcription coregulator activity. Acts upstream of or within atrioventricular canal development and cardiac jelly development. Predicted to be located in nucleus. Predicted to be part of mediator complex. Predicted to be active in chromatin. Orthologous to human MED10 (mediator complex subunit 10).

GO:

id name namespace
GO:0007507 heart development biological_process

KEGG:

id description
K15151 MED10, NUT2; mediator of RNA polymerase II transcription subunit 10

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_09650064_09651286.mRNA True 662 mRNA 0.37 4 9649807 9651286

Neighbor

gene id symbol gene type direction distance location
CI01000054_09531778_09544007 NA coding downstream 105297 9531510 ~ 9544510 (-)
CI01000054_09495785_09497239 IRX4B, IRX4 coding downstream 152125 9495450 ~ 9497682 (-)
CI01000054_09488559_09488870 NA coding downstream 160937 9488276 ~ 9488870 (-)
CI01000054_09483912_09484282 MRPL36 coding downstream 165525 9483147 ~ 9484282 (-)
CI01000054_09453616_09482480 LPCAT1 coding downstream 167084 9452109 ~ 9482723 (-)
CI01000054_09686420_09705911 NSUN2.S, NSUN2 coding upstream 34761 9686047 ~ 9705911 (-)
CI01000054_09812111_09813425 NA coding upstream 160572 9811858 ~ 9813501 (-)
CI01000054_09831831_09832148 NA coding upstream 180472 9831758 ~ 9832148 (-)
CI01000054_09841097_09848347 ATAT1 coding upstream 189728 9841014 ~ 9848892 (-)
CI01000054_09864693_09866871 PPP1R11 coding upstream 212997 9863321 ~ 9867212 (-)
G235575 NA non-coding downstream 72931 9576594 ~ 9576876 (-)
G235368 NA non-coding downstream 89904 9556764 ~ 9559903 (-)
G235350 NA non-coding downstream 122540 9526848 ~ 9527267 (-)
G235308 NA non-coding downstream 207956 9437469 ~ 9441851 (-)
G235298 NA non-coding downstream 249241 9400361 ~ 9400566 (-)
G235641 NA non-coding upstream 19512 9670798 ~ 9671024 (-)
G235642 NA non-coding upstream 20742 9672028 ~ 9672418 (-)
G235643 NA non-coding upstream 21774 9673060 ~ 9673526 (-)
G235645 NA non-coding upstream 23170 9674456 ~ 9674878 (-)
G235646 NA non-coding upstream 23732 9675018 ~ 9675243 (-)
G235216 NA other downstream 401269 9248039 ~ 9248538 (-)
CI01000054_07165957_07169539 HEYL other downstream 2478134 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 2995794 6628082 ~ 6642160 (-)
G232274 NA other downstream 4440567 5206199 ~ 5209240 (-)
CI01000054_10817235_10819181 TAC1 other upstream 1152585 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 1219818 10871104 ~ 10881495 (-)
G236748 NA other upstream 1633908 11285194 ~ 11295784 (-)
CI01000054_11780397_11781842 SNAPIN other upstream 2127604 11778890 ~ 11781880 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location