CI01000054_09737668_09759688


Basic Information

Item Value
gene id CI01000054_09737668_09759688
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9735734 ~ 9759887 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_09737668_09759688.mRNA
GTATAAAGAATATGAGAAGTTAAACTTTCAAACCCACCAGAGATGGTGCTATGACTCCCTAAATGATTTAAGGCCTCTGCTACTGTTTTCAAGAAATAGTTCACTCAAAATTGAACATTCTGTCATCATTTACTAACCTTCATGTCCTTCCAAACATGTTTGTTGATTTTTTTTTGTTTTTTTTGTTTTTTTTGTGAAACACTAAAGAATATTTATGCCACTCTTTACAATTACAGTTCAACTATGTATTATTATTTTTATTTAAAAAAAAAAAAATGATATTACTTGTGCGCTATATTCCAAATCTTCTGAAAAATAGAATTGAGTGAGGTAAAAAATGGAATTTAAGTCATTATTCACTGATAATCTTCCATGCCAGGAAGCTGTTTACTCAAAAGCAGCTGTGACTGGAGTCAGTGAATTGAACTTGTGAAACAGATCAGTGAATGAATTGTTCTTTTGAATCGTTCTTTTAAATGAACCGCTTGTTCCAGTTTACACATCATACTAAACAATTGGTTCATGAATGAGACTGCTTTCATTCACAAATTTCTCACTGGCTCGTATGTACAATAGTTCTGGAGTTAATGATTCAGTGGAGGGGAAATTTTGGTCCCTGTTGAAGGACTTCAGAAGACTTGTAATGTATTTGCACAAATTGTATGGATTATATTAAAAAATAGATATAGTCATTTCATTTACCCCCCAAGTAAATGATGACAGAATTTCTTTCTTTCTTTCTTTCTTTCTTTTTAACTGCATGAAATCATTTGGCATGTGCAGTTTTCTTTCCTGTGTTATTGATGTATTTCAAGTTTGGGAAGCTATTTTTTGCAAAGTAGCTGTTTTTAGTTATGTCACATATGAGCTATGATTTGCAACTTGCTAATCTGTTGCATTCTCATTTTAGACTGCATCTGATTGGATTAAAATTGGTGTAGTGAAGGATGATGTTATCAGTATTTTTGGTCTATACACTTTAAATGTGAACTTGGCTAATTTTCTAATTTTCTCTTAGAGGTACGTTAGCATATACATAATTTATAAATTTACATACACTACCATTCAAAAGTTTGAAAGAAATAAATAAAGAAAGAAATGAATACTTTTATTCATCAACACATTAAACTAATCAAAAGTGGCAGTAAATACATTAATAATGTTCTATTAATCAAAGAATCCTAAATAAATGTATCACAGTTCCCACAAAAATATTAATCAGAACAACTGTTTTCAGCATTGATAATAATAAATGTTATTTAAAATTTTAATAATAAACAATTAAAAGCAGTTCTTAGTTGGGTTAGTTCACCCAAAAATGAAATTTCTGTCATTAAGTACTGAAAACTGAAAATTTTAACAATGTCTTTAGTACCTTTCTGGACCTTGAATGTGGAAATTATTGTTTCTTTCTATGGGGGATACAAAAAAAAAAAAAAAAAAACTCTCGGATTGCATCAAAAATATCTTAATTTGTGTTATGAAGATGAACGAAGGTCTTACGGGTTTGGAACGACATGAGTGTGAGTAATTAATGACAGAAACTTCATTTTTGGGTGAACTAACCCTTTAAATTGTAATAATATTTCACAATATTACTTTTTACTGTATTTTTGATCAAATAAATGCAGCCTGGGTAAGCATTAAAAAATCTTACCAACCCCAAACTTTTGAACGGTAGTGTACATTGATTATAAGACTCACATTTTGATTTCATGGGATCTTTAAGTTGCAGGTGTTCTACCCAAGATAGTCGAGATACAGACTTGTCAATACTGAGTAGGACAACAACTTGACTTGTAAGCTTTCCAATCGAAGTCTATTGATGATAATGCCACACAACATGACAACAACAAGCTTCAAGCAATAGAGAGATGTCACCTCTATTACTGGAGCCTAGGGATTACTGATGATGCCTCAAGCACTTGAATGAGATGAGGCTCGCAACGCCAAAAGAAGGTCATGCTTCAGGTTGCACTGGTTTGCTTTGTTCATTAAATTCAGTGAGCGTATGTATACTTGCATTTATGTGGCTGTGGTGCTCTTCACATCTAATGAGATCATCAGCCCATTTCAGTGGACAGACTCAGTGGAGTCAAAATTCACCAGAGTGCCACAGTCTCGCACAGCCATTAGGCCAGGACCGCTTTAATGGAGGCTGTCTAACGAGGGTCTTTTTTGCTGATTTTGAACTGTGCAGTGCTTGGCATGTGTTTCATATGAGCAAAAAGCCTCAGACTTGGACTCCATATGGGTTCCAAGCACTCTCTCTCCTGCCCTGGCGCGGGACACATCTGTCCCACCCGCCGCAGCTGAGCACTCTTACAGAAGAAGACGAGCCAGAACGGCAGCAGCAGGAGGAAGAGGACGAAGACGAAGGCTCGGGGGTGAGCGCCGGGGTCCAGCCGGACCCCATGTTCCAACAGACAGTCTACCTGCTGGAGGGTCCGGAGGACATGGTGTCATCCGGGGGGCTGAAGTCTCCAGACTGGGTGTACGAGTCCTACTACCGTATGACCCAGCAGCATCCACTCATCGTGTTCCTGCTGCTCATCGTCATGGGAGCATGTGTGGCTCTGCTCACTGTGTTTTTTGCCTCTGGACTGCAAATCTGTCTAGAGATTGTGTTGCTGCTCTACTGTCCTGAGAGATTAAAGATTGATGGAGTGGTGGCGGAGTTGGGGACACCACCATCCGGCAGCACTGTTGAGTGGATTTCATGGTGTGCAGTGCCCCACAGGCCTGACTTGCCTCCGCATATGTCTTGCCATGAGCCAAAGTTGGACATGGAGCACCACATGGCCTTCATCATGACTGTGCCCACAACTCTGGCCATTTTTCTCACCATCTTCATCCTCGTCTGCATCGAGTCAGTCTTCAAAAAGCTTCTTCGCCTCTTCTCCCTGCTCATCTGGGGCTGCTTGGTTGCCATGGGTTACCTCTTCATGTTCTTTGGTGGGATCATCTGTCCATGGGACCAGCTCTTGAGTTATGATATTGCGGTGGCTGTAGGAAGAGAGATTGGCTGTTCAGTGCAGGAGTAAATGTACCTCTCCATGAGTCACCCGGGCTGTTTGCTTGACAGGACTTAATAACTCGGATGGGCTCAGTGATCTGGAAATGATGAGATATGCATATACGACACAAACTGGCTCTGGATCAAAGGACAGCAACATTTCACCAGGAACTACTTCAGTAAGAGCTGGGTGGCACCTACATGACATCCATTTTAAACTGTCGACA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_09737668_09759688.mRNA True 3243 mRNA 0.39 6 9735734 9759887

Neighbor

gene id symbol gene type direction distance location
CI01000054_09713935_09728946 PAPD7 coding upstream 6277 9713935 ~ 9729457 (+)
CI01000054_09706828_09710100 SRD5A1 coding upstream 25209 9706828 ~ 9710525 (+)
CI01000054_09652700_09656625 UBE2QL1 coding upstream 78987 9652572 ~ 9656747 (+)
CI01000054_09556901_09561363 IRX1, IRX1B coding upstream 174154 9556277 ~ 9561580 (+)
CI01000054_09485610_09487896 NDUFS6 coding upstream 247767 9485241 ~ 9487967 (+)
CI01000054_09761729_09811401 ADCY2A, ADCY2, ADCY2B coding downstream 1403 9761290 ~ 9811633 (+)
CI01000054_09815882_09817184 NA coding downstream 55995 9815882 ~ 9817561 (+)
CI01000054_09821936_09830034 NA coding downstream 61524 9821411 ~ 9831076 (+)
CI01000054_09854830_09855777 NA coding downstream 94441 9854328 ~ 9855897 (+)
CI01000054_09867474_09888100 VARS2 coding downstream 107587 9867474 ~ 9888402 (+)
G235411 NA non-coding upstream 64710 9669876 ~ 9671024 (+)
G235382 NA non-coding upstream 158858 9576600 ~ 9576876 (+)
G235337 NA non-coding upstream 216337 9519146 ~ 9519397 (+)
G234864 NA non-coding upstream 282889 9452097 ~ 9452845 (+)
G235448 NA non-coding downstream 73737 9833624 ~ 9835331 (+)
G235433 NA non-coding downstream 89436 9849323 ~ 9852693 (+)
G235439 NA non-coding downstream 149745 9909632 ~ 9914300 (+)
G235440 NA non-coding downstream 323746 10083633 ~ 10087802 (+)
G235501 NA non-coding downstream 429545 10189432 ~ 10189653 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 1406146 8325126 ~ 8329716 (+)
G233306 NA other upstream 1430785 8304599 ~ 8304949 (+)
G233024 NA other upstream 2125841 7567523 ~ 7609893 (+)
G232870 NA other upstream 2847231 6887912 ~ 6888503 (+)
G232659 NA other upstream 3359840 6374850 ~ 6375894 (+)
G235560 NA other downstream 628249 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 1805089 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 1873089 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 1888092 11647959 ~ 11649495 (+)
G236874 NA other downstream 2053801 11813688 ~ 11816475 (+)

Expression


Co-expression Network