CI01000054_09815882_09817184


Basic Information

Item Value
gene id CI01000054_09815882_09817184
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9815882 ~ 9817561 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_09815882_09817184.mRNA
ATGAAATCGGCAGAATGCTTGGTGATGGAGGATTTGGCTCTGTCTAGGAAACGCTTGGAGGATGGCCTTGAGCCTGGCCATCCCACACCCGTCCCATTAGAGGTCGGCCTGTTAACCCTTGTTAATAGGGACCCCAAAGTTCAACAGATTATTGAGCTGCTGGACTGGCAGGACCAGCCTGACCAATATATCATGGTCTTGGAGCGTCCCTCACCCTGCGAAGATCTGTGGGAATTTATAGCGTTTCGAGAAGACACCCTCAATGAGGACACGGCACAATATATCATGGTGCAGCCAACAATGGCTGCTCACATAAACACTAAACTGATTGACTTCGGGTGTGGGGATCTCCTGCAAGAGTCCCCCTATGACATCTTCTGTGGCACAGAGGATTACTGCCCACCTGAGTTCTACACAGAGGGCAAGTACCACGGTAAACCAGCTACTGTGTGGTCTCTGGGAGTGCTCTTATTCCTGTTGGTGTGTGGACGCTTTCCAGAACCCAGAGACAGGCAGATGATTGATAACGATATATGGTCTGAGCCTGGCTTGTCAAACAAATGCTGCCACCTGATTCGAACCCTCCTGGAGGAAAACCCAAGACAAATAGACTGATTTGAGGAAAATCCTTCTGCATGAATGGTTTAAGGTAGTGAGCCTAAGATCAGCTACAAATGATTTTGAAGATATTCACTTTTCATTTTAAAGATTTTAAAAATGTTCTCTTCTAATTGTAATGTATGTCGACTGTAAGCTTGGTTTCTGTTTTTTTTTTTCTTTATTTCACAGAATAAGACATAAAGAGAAATATGTCAATAGTGCAATTGAATTGGAAACTTTATTTGCTTTTTTACCGCCACAGTTCCAGAGTTCCTTGAGCTTAGCATCTGGTGGCCTGACACAAGCGGCCATCCCTCCATGCCTTGGCTGGCGACCCTTGGCTTGTGGTGGTAATATTAGCATCTGGCGATATTACTTGCCTAGGAACAGTA

Function

NR:

description
LOC562179 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_09815882_09817184.mRNA True 992 mRNA 0.45 5 9815882 9817561

Neighbor

gene id symbol gene type direction distance location
CI01000054_09761729_09811401 ADCY2A, ADCY2, ADCY2B coding upstream 4249 9761290 ~ 9811633 (+)
CI01000054_09737668_09759688 NA coding upstream 55995 9735734 ~ 9759887 (+)
CI01000054_09713935_09728946 PAPD7 coding upstream 86425 9713935 ~ 9729457 (+)
CI01000054_09706828_09710100 SRD5A1 coding upstream 105357 9706828 ~ 9710525 (+)
CI01000054_09652700_09656625 UBE2QL1 coding upstream 159135 9652572 ~ 9656747 (+)
CI01000054_09821936_09830034 NA coding downstream 3850 9821411 ~ 9831076 (+)
CI01000054_09854830_09855777 NA coding downstream 36767 9854328 ~ 9855897 (+)
CI01000054_09867474_09888100 VARS2 coding downstream 49913 9867474 ~ 9888402 (+)
CI01000054_09900501_09903235 MGAT1B coding downstream 82765 9900326 ~ 9904507 (+)
CI01000054_09917664_09918469 NA coding downstream 100103 9917664 ~ 9918866 (+)
G235411 NA non-coding upstream 144858 9669876 ~ 9671024 (+)
G235382 NA non-coding upstream 239006 9576600 ~ 9576876 (+)
G235337 NA non-coding upstream 296485 9519146 ~ 9519397 (+)
CI01000054_09485610_09487896 NDUFS6 non-coding upstream 327924 9485241 ~ 9487967 (+)
G234864 NA non-coding upstream 363037 9452097 ~ 9452845 (+)
G235448 NA non-coding downstream 16063 9833624 ~ 9835331 (+)
G235433 NA non-coding downstream 31762 9849323 ~ 9852693 (+)
G235439 NA non-coding downstream 92071 9909632 ~ 9914300 (+)
G235440 NA non-coding downstream 266072 10083633 ~ 10087802 (+)
G235501 NA non-coding downstream 371871 10189432 ~ 10189653 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 1486294 8325126 ~ 8329716 (+)
G233306 NA other upstream 1510933 8304599 ~ 8304949 (+)
G233024 NA other upstream 2205989 7567523 ~ 7609893 (+)
G232870 NA other upstream 2927379 6887912 ~ 6888503 (+)
G232659 NA other upstream 3439988 6374850 ~ 6375894 (+)
G235560 NA other downstream 570575 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 1747415 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 1815415 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 1830418 11647959 ~ 11649495 (+)
G236874 NA other downstream 1996127 11813688 ~ 11816475 (+)

Expression


Co-expression Network