XLOC_009882 (s100a10b)


Basic Information

Item Value
gene id XLOC_009882
gene name s100a10b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23397785 ~ 23399484 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019717
AGCTTGGACAACTCCCGCGCAGGACATTCACATCATTCCTTCATCTTCAGGTGACGCTCTGCCTTTATCAGCACATTCACAATGCCATCTGATCTGGAGAGAGCAATGGAGACCCTGATCACGGTGTTTCACCGTTATTCAGGCGCAGAGGGGAACTCATCAACCCTGAGTCGAAGAGAGCTTAAACAGCTGATGGAGAAAGAGCTGGCTAGTTTTCTGAAGAGTCAGAAAGACCCTGCTGCCGTAGACAAGATTATGAAGGATCTGGATGCCAATGGGGATGGAGAGGTGAATTTTGAGGAGTTTGTGTCTCTTGTGGTGGGCCTGTCCATCGCCTGCGAACAACTCTACCAGAAACAGATGAAAGCAGCAGCCAAGAAGTAATAAAAGACCAAACatgaggggaaaaaaagtttttctgtTTTGTCACATTGTTAATAGTTTAATACACACTTTCATCCGCATGCCCCAATTGGAAGTTGCAACTGCAGTTACAATGCATTTTTGCAAATGAGgatgttttgtcatttttgtcaaGTCATGTTCAGTTTTATTGTAAGTTTTTCTTGTTTGAAGTATTATTTAGACACAAAAGATGTCATCATCATCCGAACAAATAGTACAACcgtgaaaataaacattttgtgatttttttttattccatatattttttttgtcctGCTTTTCCTCTTTGTACTCTTAAGGTCTGAATTCCACAGTTCTCTGTGAAATAACATCCTGAGAATGAGAATGCAAAATGTCTTTTAGGATTGACTCGAGGGCACAGAGGCACACTGGAATTGGAGGAGTTTGAGATTATCTGTATTGTGCTTTGTAATCTGAACATGGAATGTTCCAGAAC
>TCONS_00019718
GCGCAGGACATTCACATCATTCCTTCATCTTCAGGTGACGCTCTGCCTTTATCAGCGCGCAGAGGGGAACTCATCAACCCTGAGTCGAAGAGAGCTTAAACAGCTGATGGAGAAAGAGCTGGCTAGTTTTCTGAAGAGTCAGAAAGACCCTGCTGCCGTAGACAAGATTATGAAGGATCTGGATGCCAATGGGGATGGAGAGGTGAATTTTGAGGAGTTTGTGTCTCTTGTGGTGGGCCTGTCCATCGCCTGCGAACAACTCTACCAGAAACAGATGAAAGCAGCAGCCAAGAAGTAATAAAAGACCAAACatgaggggaaaaaaagtttttctgtTTTGTCACATTGTTAATAGTTTAATACACACTTTCATCCGCATGCCCCAATTGGAAGTTGCAACTGCAGTTACAATGCATTTTTGCAAATGAGgatgttttgtcatttttgtcaaG
>TCONS_00019719
CTCAATTTAGACATTCACAATGCCATCTGATCTGGAGAGAGCAATGGAGACCCTGATCACGGTGTTTCACCGTTATTCAGGCGCAGAGGGGAACTCATCAACCCTGAGTCGAAGAGAGCTTAAACAGCTGATGGAGAAAGAGCTGGCTAGTTTTCTGAAGAGTCAGAAAGACCCTGCTGCCGTAGACAAGATTATGAAGGATCTGGATGCCAATGGGGATGGAGAGGTGAATTTTGAGGAGTTTGTGTCTCTTGTGGTGGGCCTGTCCATCGCCTGCGAACAACTCTACCAGAAACAGATGAAAGCAGCAGCCAAGAAGTAATAAAAGACCAAACatgaggggaaaaaaagtttttctgtTTTGTCACATTGTTAATAGTTTAATACACACTTTCATCCGCATGCCCCAATTGGAAGTTGCAACTGCAGTTACAATGCATTTTTGCAAATGAGgatgttttgtcatttttgtcaaGTCATGTTCAGTTTTATTGTAAGTTTTTCTTGTTTGAAGTATTATTTAGACACAAAAGATGTCATCATCATCCGAACAAATAGTACAACcgtgaaaataaa

Function

symbol description
s100a10b Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be active in cytoplasm and extracellular space. Is expressed in several structures, including digestive system; ectoderm; hematopoietic system; lens; and solid lens vesicle. Orthologous to several human genes including S100A10 (S100 calcium binding protein A10).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0005615 extracellular space cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1937 Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be active in cytoplasm and extracellular space. Is expressed in several structures, including digestive system; ectoderm; hematopoietic system; lens; and solid lens vesicle. Orthologous to several human genes including S100A10 (S100 calcium binding protein A10).

Ensembl:

ensembl_id ENSDARG00000025254

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019717 False 862 mRNA 0.41 3 23397785 23399484
TCONS_00019718 False 452 processed_transcript 0.44 3 23397801 23399160
TCONS_00019719 True 576 mRNA 0.41 2 23398369 23399260

Neighbor

gene id symbol gene type direction distance location
XLOC_009881 krtcap2 coding upstream 5519 23326085 ~ 23392266 (+)
XLOC_009880 slc50a1 coding upstream 82907 23303859 ~ 23314878 (+)
XLOC_009879 efna1b coding upstream 99636 23282655 ~ 23298149 (+)
XLOC_009878 efna3b coding upstream 207902 23087326 ~ 23189883 (+)
XLOC_009877 flad1 coding upstream 516447 22864313 ~ 22881338 (+)
XLOC_009883 s100w coding downstream 4118 23403602 ~ 23406155 (+)
XLOC_009884 icn coding downstream 31705 23431189 ~ 23432552 (+)
XLOC_009885 icn2 coding downstream 87567 23487051 ~ 23491093 (+)
XLOC_009886 snx27b coding downstream 96116 23495600 ~ 23524374 (+)
XLOC_009887 adar coding downstream 132099 23531583 ~ 23557714 (+)
XLOC_009875 NA non-coding upstream 701289 22695226 ~ 22696496 (+)
XLOC_009872 NA non-coding upstream 818459 22575143 ~ 22579326 (+)
XLOC_009870 NA non-coding upstream 1068757 22327970 ~ 22329028 (+)
XLOC_009869 NA non-coding upstream 1070283 22323766 ~ 22327502 (+)
XLOC_009868 NA non-coding upstream 1283849 22022291 ~ 22113936 (+)
XLOC_009889 CR533578.1 non-coding downstream 207747 23607231 ~ 23607352 (+)
XLOC_009902 NA non-coding downstream 619624 24019108 ~ 24028618 (+)
XLOC_009903 NA non-coding downstream 798995 24198479 ~ 24207903 (+)
XLOC_009904 CT867948.1 non-coding downstream 1116608 24516092 ~ 24524076 (+)
XLOC_009905 NA non-coding downstream 1166250 24565734 ~ 24573801 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G108055 NA non-coding NC_056713.1 CM032082.1 19488226 ~ 19535847 (+)
tiger barb (Puntius tetrazona) G113092 s100a10b,LOC107714718,LOC107595024,LOC105891828 non-coding NC_056714.1 CM032083.1 15168373 ~ 15170070 (-)
mexican tetra (Astyanax mexicanus) G123736 NA unknown NC_035910.1 CM008313.1 21927650 ~ 21936753 (-)