CI01000054_09864693_09866871 (PPP1R11)


Basic Information

Item Value
gene id CI01000054_09864693_09866871
gene name PPP1R11
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9863321 ~ 9867212 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_09864693_09866871.mRNA
AAATTCATCTCATGCATTCATCACAGATTCACATAGCGTCTAGCTCGACATTCTGACACGACAACCGACAACTGAATATTTGTTTTTTAATATTCTCTAAATTGAGACCAGACTTTCGTCGATCGAGCGCCTCTGGGAAGGTTTATTCAGGTTTCATCAGTGCTATGGCGGAGGTACAACGTACATCGAGTGAGACGATAACGGAGACCGTTCAGACGGGCACACCACCTCCACCGCAGCAGGAGGGCAGAAGCTTGACCATCAAGCTCAGGAAAAGGAAGACGGAGAAGAAAGTGGAGTGGTCCAGTGACACGGTGGACAATGAACATCTAGGCCGGAGGTCTTCAAAGTGTTGCTGTATTTACGAGAAGCCACGACAGTTCGGCGAATCTTCCTCGGAAAGCGAGGGGGATGACGAGGAAGGCTGCGGAAGTGCGCACTGCGTTCTGGGACATGGGAGAAGAGGCCATGGACAGAGGGAGGGCGGAGGGACCACAGCGCCACCTAGCTCTGGGGGAACAAACCCTCACTAGAAGATAATGGGAGTCTTTTTGGAGCAAAGGGTAACGGGCGGCACTACATTCATAATCCCTCATCCTCACTCACACTGAATTACATCACACCATCACTGGGTGTCGAAAGCTTTTTGATGAATGAAAGCTTGTAGAGCAAAGCAATGTGATTCGTTTTCCTCGTGGTCATTAGTGTGATGACTTTGGGAAGACTTAACTTTTTTTGCGATCTGAATGCTGCGGAAAATTGATATTTGTTGTACATAGGACATTGGTTTTTATTTCTTTTTGTAAAATCAATATTTATTTGTTTGTGTTTAACAACTTCATTTTACCAGTTCTGTATCCACAAACAATATTTTAATTAATTAAAAACCTTCAAATATAATTCGGGAAGGTTTATACCTCCTTGCGAATTTAAAAGGAATAAA
>TU267307
CCGAGGAGTGATTAGACTAGTGCAAATTCATCTCATGCATTCATCACAGATTCACATAGCGTCTAGCTCGACATTCTGACACGACAACCGACAACTGAATATTTGTTTTTTAATATTCTCTAAATTGAGACCAGACTTTCGTCGATCGAGCGCCTCTGGGAAGGTTTATTCAGGTTTCATCAGTGCTATGGCGGAGGTACAACGTACATCGAGTGAGACGATAACGGAGACCGTTCAGACGGGCACACCACCTCCACCGCAGCAGGAGGGCAGAAGCTTGACCATCAAGCTCAGGAAAAGGAAGACGGAGAAGAAAGTGGAGTGGTCCAGTGACACGGTGGACAATGAACATCTAGGCCGGAGGTCTTCAAAGTGTTGCTGTATTTACGAGAAGCCACGACAGTTCGGCGAATCTTCCTCGGAAAGCGAGGGGGATGACGAGGAAGGCTGCGGAAGTGCGCACTGCGTTCTGGGACATGGGAGAAGAGGCCATGGACAGAGGGAGGGCGGAGGGACCACAGCGCCACCTAGCTCTGGGGGAACAAACCCTCACTAGAAGATAATGGGAGTCTTTTTGGAGCAAAGGGTAACGGGCGGCACTACATTCATAATCCCTCATCCTCACTCACACTGAATTACATCACACCATCACTGGGTGTCGAAAGCTTTTTGATGAATGAAAGCTTGTAGAGCAAAGCAATGTGATTCGTTTTCCTCGTGGTCATTAGTGTGATGACTTTGGGAAGACTTAACTTTTTTTGCGATCTGAATGCTGCGGAAAATTGATATTTGTTGTACATAGGACATTGGTTTTTATTTCTTTTTGTAAAATCAATATTTATTTGTTTGTGTTTAACAACTTCATTTTACCAGTTCTGTATCCACAAACAATATTTTAATTAATTAAAAACCTTCAAATATAATTCGGGAAGGTTTATACCTCCTTGCGAATTTAAAAGGAATAAATGCAGTATAAAAAAAAGGAATTTTATATCAAATATAATTTGCCTTGCTGTGTCACAATTCTAGCAGCAGTATTTCTTCATATCACTTTATCACTTCAGGAAATTCAAGCGTAGTAAATGTTGTGTGCTATAGTGAATTCAATAAATGAGATTTCAGGAACTCAACCTTTTTGAATATAGTTACAAGGGTGCATTAAATCATCTCCGTTAGTTTTCATAAGTTTGATTGAGATCTAGTGAGACTCCCCTCAGACAATCAGGCTAGTAAGAGACTCAGCATGTACATACAAACACATTGTGTTTAAGACGTAGTAAAGTGGACTGAGAAACATCTGAATTCATTCTGAATGCGAGGTGAGAATGGCACTTTGATCATTACCCAAAACTGAAACAGCAGCAGTGAAATTAAACGGTAGGATACTGATCTGAAAATGTGTAGATTTGGCAATTATCCTTTCATTCTCATGCTTTACATGAAATACAGGGGAAAATGTTTTGGTGTGTGTGATTGAGAAGATCACCCTTTGACGTGTAAGGTGCCTCATGTCATCCTGATCACTATGGCTGCTTTTATTTAGCAGAAATTGGTATAAAATCCAACTATTAGTGGGAGAGGTGCATGCTGTCAGCATGGTGTATACAGTAGTAGTTAGACTTGAGCTTTAAGGACTGATTACATGTGGTTATAAAGAACACGGGAAGGTGCATGACTGAATGCTGGCCAAGACCAAAATGCACATAGCATCATCTCTCCACTGATTTCAGATACAGTTTACAGTTGATTCCCATCAGGACCATCACATCAGTCACCTGTATCCCAGCATTCACATGCATCTGTCGTCCCTTTACTGTGAACGCACCTGTATGTACATAGGTCATAGAGTGGATTTAACATGAATAAACAGATGTTAAATTATGTTGTTTATATCTATTAAATGCTTAATGGCAACCTGATTGTGTCGT
>TU267309
GTGTTTCGAGTAAATAGCGTTTTTAGACATAAAAAGTCAGCTGAGCTGACTTCAAACACAACTATAATGTTACAAATCTAGTCTAGCTAGTCAACTCACTAGTTTTTAAAACACAGTCAACTTCAGAAACTGGTCCGTCCATAAATGCGTCCTTCCGAGGAGTGATTAGACTAGTGCAAATTCATCTCATGCATTCATCACAGATTCACATAGCGTCTAGCTCGACATTCTGACACGACAACCGACAACTGAATATTTGTTTTTTAATATTCTCTAAATTGAGACCAGACTTTCGTCGATCGAGCGCCTCTGGGAAGGTTTATTCAGGTTTCATCAGTGCTATGGCGGAGGTACAACGTACATCGAGTGAGACGATAACGGAGACCGTTCAGACGGGCACACCACCTCCACCGCAGCAGGAGGGCAGAAGCTTGACCATCAAGCTCAGGAAAAGGAAGACGGAGAAGAAAGTGGAGTGGTCCAGTGACACGGTGGACAATGAACATCTAGGCCGGAGGTCTTCAAAGTGTTGCTGTATTTACGAGAAGCCACGACAGTTCGGCGAATCTTCCTCGGAAAGCGAGGGGGATGACGAGGAAGGCTGCGGAAGTGCGCACTGCGTTCTGGGACATGGGAGAAGAGGCCATGGACAGAGGGAGGGCGGAGGGACCACAGCGCCACCTAGCTCTGGGGGAACAAACCCTCACTAGAAGATAATGGGAGTCTTTTTGGAGCAAAGGGTAACGGGCGGCACTACATTCATAATCCCTCATCCTCACTCACACTGAATTACATCACACCATCACTGGGTGTCGAAAGCTTTTTGATGAATGAAAGCTTGTAGAGCAAAGCAATGTGATTCGTTTTCCTCGTGGTCATTAGTGTGATGACTTTGGGAAGACTTAACTTTTTTTGCGATCTGAATGCTGCGGAAAATTGATATTTGTTGTACATAGGACATTGGTTTTTATTTCTTTTTGTAAAATCAATATTTATTTGTTTGTGTTTAACAACTTCATTTTACCAGTTCTGTATCCACAAACAATATTTTAATTAATTAAAAACCTTCAAATATAATTCGGGAAGGTTTATACCTCCTTGCGAATTTAAAAGGAATAAATGCAGTATAAAAAAAAGGAATTTTATATCAAATATAATTTGCCTTGCTGTGTCACAATTCTAGCAGCAGTATTTCTTCATATCACTTTATCACTTCAGGAAATTCAAGCGTAGTAAATGTTGTGTGCTATAGTGAATTCAATAAATGAGATTTCAGGAACTCAACCTTTTTGAATATAGTTACAAGGGTGCATTAAATCATCTCCGTTAGTTTTCATAAGTTTGATTGAGATCTAGTGAGACTCCCCTCAGACAATCAGGCTAGTAAGAGACTCAGCATGTACATACAAACACATTGTGTTTAAGACGTAGTAAAGTGGACTGAGAAACATCTGAATTCATTCTGAATGCGAGGTGAGAATGGCACTTTGATCATTACCCAAAACTGAAACAGCAGCAGTGAAATTAAACGGTAGGATACTGATCTGAAAATGTGTAGATTTGGCAATTATCCTTTCATTCTCATGCTTTACATGAAATACAGGGGAAAATGTTTTGGTGTGTGTGATTGAGAAGATCACCCTTTGACGTGTAAGGTGCCTCATGTCATCCTGATCACTATGGCTGCTTTTATTTAGCAGAAATTGGTATAAAATCCAACTATTAGTGGGAGAGGTGCATGCTGTCAGCATGGTGTATACAGTAGTAGTTAGACTTGAGCTTTAAGGACTGATTACATGTGGTTATAAAGAACACGGGAAGGTGCATGACTGAATGCTGGCCAAGACCAAAATGCACATAGCATCATCTCTCCACTGATTTCAGATACAGTTTACAGTTGATTCCCATCAGGACCATCACATCAGTCACCTGTATCCCAGCATTCACATGCATCTGTCGTCCCTTTACTGTGAACGCACCTGTATGTACATAGGTCATAGAGTGGATTTAACATGAATAAACAGATGTTAAATTATGTTGTTTATATCTATTAAATGCTTAATGGCAACCTGATTGTGTCGT
>TU267308
CCGAGGAGTGATTAGACTAGTGCAAATTCATCTCATGCATTCATCACAGATTCACATAGCGTCTAGCTCGACATTCTGACACGACAACCGACAACTGAATATTTGTTTTTTAATATTCTCTAAATTGAGACCAGACTTTCGTCGATCGAGCGCCTCTGGGAAGGTTTATTCAGGTTTCATCAGTGCTATGGCGGAGGTACAACGTACATCGAGTGAGACGATAACGGAGACCGTTCAGACGGGCACACCACCTCCACCGCAGCAGGAGGGCAGAAGCTTGACCATCAAGCTCAGGAAAAGGAAGACGGAGAAGAAAGTGGAGTGGTCCAGTGACACGGTGGACAATGAACATCTAGGCCGGAGGTCTTCAAAGTGTTGCTGTATTTACGAGAAGCCACGACAGTTCGGCGAATCTTCCTCGGAAAGCGAGGGGGATGACGAGGAAGGCTGCGGAAGTGCGCACTGCGTTCTGGGACATGGGAGAAGAGGCCATGGACAGAGGGAGGGCGGAGGGACCACAGCGCCACCTAGCTCTGGGGGAACAAACCCTCACTAGAAGATAATGGGAGTCTTTTTGGAGCAAAGGGTAACGGGCGGCACTACATTCATAATCCCTCATCCTCACTCACACTGAATTACATCACACCATCACTGGGTGTCGAAAGCTTTTTGATGAATGAAAGCTTGTAGAGCAAAGCAATGTGATTCGTTTTCCTCGTGGTCATTAGTGTGATGACTTTGGGAAGACTTAACTTTTTTTGCGATCTGAATGCTGCGGAAAATTGATATTTGTTGTACATAGGACATTGGTTTTTATTTCTTTTTGTAAAATCAATATTTATTTGTTTGTGTTTAACAACTTCATTTTACCAGTTCTGTATCCACAAACAATATTTTAATTAATTAAAAACCTTCAAATATAATTCGGGAAGGTTTATACCTCCTTGCGAATTTAAAAGGAATAAATGCAGTATAAAAAAAAGGAATTTTATATCAAATATAATTTGCCTTGCTGTGTCACAATTCTAGCAGCAGTATTTCTTCATATCACTTTATCACTTCAGGAAATTCAAGCGTAGTAAATGTTGTGTGCTATAGTGAATTCAATAAATGAGATTTCAGGAACTCAACCTTTTTGAATATAGTTACAAGGGTGCATTAAATCATCTCCGTTAGTTTTCATAAGTTTGATTGAGATCTAGTGAGACTCCCCTCAGACAATCAGGCTAGTAAGAGACTCAGCATGTACATACAAACACATTGTGTTTAAGACGTAGTAAAGTGGACTGAGAAACATCTGAATTCATTCTGAATGCGAGGTGAGAATGGCACTTTGATCATTACCCAAAACTGAAACAGCAGCAGTGAAATTAAACGGTAGGATACTGATCTGAAAATGTGTAGATTTGGCAATTATCCTTTCATTCTCATGCTTTACATGAAATACAGGGGAAAATGTTTTGGTGTGTGTGATTGAGAAGATCACCCTTTGACGTGTAAGGTGCCTCATGTCATCCTGATCACTATGGCTGCTTTTATTTAGCAGAAATTGGTATAAAATCCAACTATTAGTGGGAGAGGTGCATGCTGTCAGCATGGTGTATACAGTAGTAGTTAGACTTGAGCTTTAAGGACTGATTACATGTGGTTATAAAGAACACGGGAAGGTGCATGACTGAATGCTGGCCAAGACCAAAATGCACATAGCATCATCTCTCCACTGATTTCAGATACAGTTTACAGTTGATTCCCATCAGGACCATCACATCAGTCACCTGTATCCCAGCATTCACATGCATCTGTCGTCCCTTTACTGTGAACGCACCTGTATGTACATAGGTCATAGAGTGG

Function

symbol description
ppp1r11 Predicted to enable protein phosphatase 1 binding activity; protein serine/threonine phosphatase inhibitor activity; and ubiquitin protein ligase activity. Predicted to be involved in defense response to Gram-positive bacterium; negative regulation of macromolecule metabolic process; and ubiquitin-dependent protein catabolic process. Predicted to be active in nucleus. Orthologous to human PPP1R11 (protein phosphatase 1 regulatory inhibitor subunit 11).

GO:

id name namespace
GO:0004864 protein phosphatase inhibitor activity molecular_function

KEGG:

id description
K17553 PPP1R11; protein phosphatase 1 regulatory subunit 11

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_09864693_09866871.mRNA False 943 mRNA 0.44 3 9864283 9867035
TU267307 False 1928 TUCP 0.41 3 9863321 9867058
TU267309 False 2082 TUCP 0.41 3 9863321 9867212
TU267308 True 1851 TUCP 0.42 3 9863398 9867058

Neighbor

gene id symbol gene type direction distance location
CI01000054_09841097_09848347 ATAT1 coding downstream 15391 9841014 ~ 9848892 (-)
CI01000054_09831831_09832148 NA coding downstream 32135 9831758 ~ 9832148 (-)
CI01000054_09812111_09813425 NA coding downstream 50782 9811858 ~ 9813501 (-)
CI01000054_09686420_09705911 NSUN2.S, NSUN2 coding downstream 158372 9686047 ~ 9705911 (-)
CI01000054_09650064_09651286 MED10, MED10.S coding downstream 212997 9649807 ~ 9651286 (-)
CI01000054_09914091_09916621 DDX39B coding upstream 46335 9913370 ~ 9916621 (-)
CI01000054_10082299_10083956 NA coding upstream 214878 10081913 ~ 10084102 (-)
CI01000054_10124266_10128452 NELFE.L, NELFE coding upstream 257019 10124054 ~ 10128452 (-)
CI01000054_10162998_10168490 NA coding upstream 295932 10162967 ~ 10169049 (-)
CI01000054_10222056_10229581 NA coding upstream 354911 10221946 ~ 10229581 (-)
G235750 NA non-coding downstream 10759 9853261 ~ 9853524 (-)
G235706 NA non-coding downstream 35114 9821113 ~ 9829169 (-)
G235737 NA non-coding downstream 68288 9793671 ~ 9795995 (-)
G235651 NA non-coding downstream 167024 9696958 ~ 9697259 (-)
G235649 NA non-coding downstream 186663 9677283 ~ 9677620 (-)
G235761 NA non-coding upstream 24745 9891780 ~ 9892046 (-)
G235764 NA non-coding upstream 62117 9929152 ~ 9936746 (-)
G235772 NA non-coding upstream 79089 9946124 ~ 9946394 (-)
G235790 NA non-coding upstream 108745 9975780 ~ 9976208 (-)
G235828 NA non-coding upstream 167118 10034153 ~ 10038735 (-)
CI01000054_09483912_09484282 MRPL36 other downstream 378896 9483147 ~ 9484282 (-)
G235216 NA other downstream 615745 9248039 ~ 9248538 (-)
CI01000054_07165957_07169539 HEYL other downstream 2692610 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 3210270 6628082 ~ 6642160 (-)
G232274 NA other downstream 4655043 5206199 ~ 5209240 (-)
CI01000054_10817235_10819181 TAC1 other upstream 936836 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 1004069 10871104 ~ 10881495 (-)
G236748 NA other upstream 1418159 11285194 ~ 11295784 (-)
CI01000054_11780397_11781842 SNAPIN other upstream 1911855 11778890 ~ 11781880 (-)

Expression


Co-expression Network