CI01000054_09914091_09916621 (DDX39B)


Basic Information

Item Value
gene id CI01000054_09914091_09916621
gene name DDX39B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9913370 ~ 9916621 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_09914091_09916621.mRNA
ATGACAGAGAACGACGTTGAGAATGAGCTGTTAGACTATGAGGAGGATGAGGTTGATGGAGGTGTTGCTGGGGATACAGGGCTTGGACACAACGATGGTGTCATATCCATCAGAAAAGAAGGGGTCAAAGGGTCATATGTGTCCATCCACTCCTCAGGATTCAGGGATTTCCTTCTCAAACCAGAACTCCTGAGAGCTATAGTGGACTGTGGCTTTGAGCATCCATCTGAGGTTCAGCATGAATGCATTCCTCAGGCGATCTTGGGGATGGATGTATTATGTCAGGCCAAGTCTGGAATGGGGAAGACGGCTGTCTTTGTGTTGGCCACCCTTCAGCAGCTGGAGCCAGTGACCGGTCAGGTATCGGTGTTGGTGATGTGTCATACCCGAGAGCTGGCGTTCCAGATCAGCAAAGAGTATGAGCGCTTCTCCAAATACATGCCTAGTGTCAAGGTGGCGGTGTTCTTTGGGGGGTTATCTATAAAGAAGGATGAGGAGGTGCTGAAAAGAGAGAGCCCTCATGTGGTGGTGGGAACTCCTGGACGTATTCTAGCTCTGTCTCGCAACAAGAGTCTCAACCTGCGACACATCAAGCACTTCATCCTGGATGAATGCGACAAGATGCTGGAGCAACTTGACATGCGGCGTGATGTCCAGGAAATCTTTCGTATGACCCCTCATGAGAAGCAGGTCATGATGTTCAGTGCGACCCTGAGCAAAGAGATCCGTCCCGTCTGCAGAAAGTTCATGCAAGATGTAATTACGCCTCTCCTACTTCTACCATGTCAACAGCTCCTTCCCTTCACAAGACCACCTCATATACACCTGAAAGAGATCCATTTATGGCCTCCCTGAGACATCGTAACACTAAATGCCCCTCTCTCCTGCCCGATTGATAATCACAGACTGTTAACTAATAGAGGCACAGTGAAAAAGATGTTAAGTCCTTAATCCCCGCCTCAGCTGGCAGCGCTGCGTCGGCATTTGGCAAACACAGTCACCCGTCCGTTTGGCCAACAGATAATGCACCATCCATCAGGCTCAGTCCTCTGTAAATTTAAATAGGTCTTTTAACAACCTTTGCTAAAGTCATGAAGAGTCCATTTTAAACAGAATAAGAGGATGTCTTTAAGGGAAGGATGTAGTGTATCTCCAAAAACACTTCAGGGCCATAAATCAAAGCATAAACACATCTTTCAAAATCATTTAGGGAGTTAAAAGAAGAAAAAAGACCCAACTCAAACGAAATCCCTCATATTTAAATAATACTTGACTCTCAGTATCTGTTTATCAAGACAAATTGCTTTAGTTCCTGCTCGACTGTAATTCCAGCCTGGAGATTTGTCCTCAAATAACCTTTAATTAAAAGAAGCACTTGTTGGAGCTTCATGAATTCTGTTGCCAGCTGCCAGAGACTCTCAAGGGGCACAAAACTAAAACCGATAAAGTATCGGCCCAACAAAGCAGGCCAGCTGCTAAAAACTACATTAGATTCACGACAAACTGGCACTCCAGGGCTGCAATTAATTACACTTTAACAAAGCAGACAGCACAATGAAATCATCTGAGGAATAAA

Function

symbol description
ddx39b Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in mRNA export from nucleus and mRNA splicing, via spliceosome. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human DDX39B (DExD-box helicase 39B).

GO:

id name namespace
GO:0042802 identical protein binding molecular_function

KEGG:

id description
K12812 DDX39B, UAP56, SUB2; ATP-dependent RNA helicase UAP56/SUB2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_09914091_09916621.mRNA True 1576 mRNA 0.46 5 9913370 9916621

Neighbor

gene id symbol gene type direction distance location
CI01000054_09864693_09866871 PPP1R11 coding downstream 46335 9863321 ~ 9867212 (-)
CI01000054_09841097_09848347 ATAT1 coding downstream 64478 9841014 ~ 9848892 (-)
CI01000054_09831831_09832148 NA coding downstream 81222 9831758 ~ 9832148 (-)
CI01000054_09812111_09813425 NA coding downstream 99869 9811858 ~ 9813501 (-)
CI01000054_09686420_09705911 NSUN2.S, NSUN2 coding downstream 207459 9686047 ~ 9705911 (-)
CI01000054_10082299_10083956 NA coding upstream 165292 10081913 ~ 10084102 (-)
CI01000054_10124266_10128452 NELFE.L, NELFE coding upstream 207433 10124054 ~ 10128452 (-)
CI01000054_10162998_10168490 NA coding upstream 246346 10162967 ~ 10169049 (-)
CI01000054_10222056_10229581 NA coding upstream 305325 10221946 ~ 10229581 (-)
CI01000054_10230849_10243712 NA coding upstream 314228 10230849 ~ 10243838 (-)
G235761 NA non-coding downstream 21324 9891780 ~ 9892046 (-)
G235750 NA non-coding downstream 59846 9853261 ~ 9853524 (-)
G235706 NA non-coding downstream 84201 9821113 ~ 9829169 (-)
G235737 NA non-coding downstream 117375 9793671 ~ 9795995 (-)
G235651 NA non-coding downstream 216111 9696958 ~ 9697259 (-)
G235764 NA non-coding upstream 12531 9929152 ~ 9936746 (-)
G235772 NA non-coding upstream 29503 9946124 ~ 9946394 (-)
G235790 NA non-coding upstream 59159 9975780 ~ 9976208 (-)
G235828 NA non-coding upstream 117532 10034153 ~ 10038735 (-)
G235687 NA non-coding upstream 118139 10034760 ~ 10122699 (-)
CI01000054_09483912_09484282 MRPL36 other downstream 427983 9483147 ~ 9484282 (-)
G235216 NA other downstream 664832 9248039 ~ 9248538 (-)
CI01000054_07165957_07169539 HEYL other downstream 2741697 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 3259357 6628082 ~ 6642160 (-)
CI01000054_10817235_10819181 TAC1 other upstream 887250 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 954483 10871104 ~ 10881495 (-)
G236748 NA other upstream 1368573 11285194 ~ 11295784 (-)
CI01000054_11780397_11781842 SNAPIN other upstream 1862269 11778890 ~ 11781880 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location