CI01000054_10082299_10083956


Basic Information

Item Value
gene id CI01000054_10082299_10083956
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10081913 ~ 10084102 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_10082299_10083956.mRNA
ACAACAGTGACAGACCGACCAAGCAAAGCACTGAAGTGATAAACTGCACTGAGGACACTTTACAGAACCTTTTAAAAAGCATTTTGACAGCATCTGCATTTTTACATATAGTTTAACTTAAGCTTTCAGAGGACAAACACACAGTAATGATGGAGCATGCCAGTCAGGTAGTGTTGGATCTTGAAAAAGTAACGCTGCCCTTGCCGAGGGTGATGGTGCCGAGGAGGAAGGCTGGCACTTCAAAGTCAGGCGTATGGCGGGTGTGTGGGGCTCTTCTGGCTGTGGCCCTGTGTGCTGCCGCTGCTGTCTGCTTCACGCTCAACAAGTCTCAGAGTAATCAGGAAAGTGCAACTGGGCTCAAGCTTACAATGAGAGATCATTTTTCAAAAGCAAATTTCACTTCCAAGGCTGCCATCCATTTAACAGGTGCATACGACCCTGAAGTCTCTAATAAAACCCTAGATTGGAGAGTGAACCAGGACCAGGCTTTCTCTTCAGGCGGCTTGAAATTAGTAAACAGGGAGATCATCATTCCTGATGACGGCATTTACTTCGTCTACAGCCAGGTCTCTTTCCACATCTGCTGCGCGTCTGACAGGGGCGCAGACCAAGACATTGTGCATATGAGCCACGCAGTTATGCGAATTTCCGATTCCTATGGAGGCAAAAAGGCGCTTTTCAGCGCTATCCGCTCCGCCTGCGTGCACGCGTCTGACAGTGACGATTTGTCGTACAACACAATTTATCTCGGTGCGGCCTTCCAATTACAAGCTGGAGACAAACTGCTCACCGAGACGACGCCACTACTCCTGCCCCGCGTCGAAAATGAAAACGGAAAGACCTTTTTTGGGGTGTTTGCTCTGTAAGCATAGATGGACATCAAGCAAAACTTGAAAAGTAAGGAAAGAATGGAAACCTGTGGAGAGGAAAGAAATTTCCTGAGCTTCCACTGCAATGTCACACACACAAAAAGAAACTAAACTGACTTCTAGCCAACGTTTTATATTAAAACAGGTCAAAATTATAACTCTATTTAATGGATCAGAAGGATCCAGATATGATGTTATGTGGGTGAAAACATGGGCATTTTGTATTCAGCTGTAAAGCTATCAAAGTTATTTATATATGTTTGTTAAAATGTTAATGTTATGTGTATTTATTGTGTAATTAATTTATTGTACTATTTATTCACCTATTTATTAAAAGAATATCTACTGCACTGCAACTGTAACGAAATTCAAATTTTAATAAA

Function

NR:

description
tumor necrosis factor a

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_10082299_10083956.mRNA True 1252 mRNA 0.43 4 10081913 10084102

Neighbor

gene id symbol gene type direction distance location
CI01000054_09914091_09916621 DDX39B coding downstream 165292 9913370 ~ 9916621 (-)
CI01000054_09864693_09866871 PPP1R11 coding downstream 214878 9863321 ~ 9867212 (-)
CI01000054_09841097_09848347 ATAT1 coding downstream 233021 9841014 ~ 9848892 (-)
CI01000054_09831831_09832148 NA coding downstream 249765 9831758 ~ 9832148 (-)
CI01000054_09812111_09813425 NA coding downstream 268412 9811858 ~ 9813501 (-)
CI01000054_10124266_10128452 NELFE.L, NELFE coding upstream 39952 10124054 ~ 10128452 (-)
CI01000054_10162998_10168490 NA coding upstream 78865 10162967 ~ 10169049 (-)
CI01000054_10222056_10229581 NA coding upstream 137844 10221946 ~ 10229581 (-)
CI01000054_10230849_10243712 NA coding upstream 146747 10230849 ~ 10243838 (-)
CI01000054_10248885_10261371 INTS3 coding upstream 164499 10248601 ~ 10261371 (-)
G235828 NA non-coding downstream 43178 10034153 ~ 10038735 (-)
G235790 NA non-coding downstream 105705 9975780 ~ 9976208 (-)
G235772 NA non-coding downstream 135519 9946124 ~ 9946394 (-)
G235764 NA non-coding downstream 145167 9929152 ~ 9936746 (-)
G235761 NA non-coding downstream 189867 9891780 ~ 9892046 (-)
G235678 NA non-coding upstream 122751 10206853 ~ 10214403 (-)
G235674 NA non-coding upstream 135603 10219705 ~ 10295938 (-)
G235890 NA non-coding upstream 296611 10380713 ~ 10380930 (-)
G235895 NA non-coding upstream 329852 10413954 ~ 10414236 (-)
G235919 NA non-coding upstream 339288 10423390 ~ 10423600 (-)
CI01000054_09483912_09484282 MRPL36 other downstream 596526 9483147 ~ 9484282 (-)
G235216 NA other downstream 833375 9248039 ~ 9248538 (-)
CI01000054_07165957_07169539 HEYL other downstream 2910240 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 3427900 6628082 ~ 6642160 (-)
CI01000054_10817235_10819181 TAC1 other upstream 719769 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 787002 10871104 ~ 10881495 (-)
G236748 NA other upstream 1201092 11285194 ~ 11295784 (-)
CI01000054_11780397_11781842 SNAPIN other upstream 1694788 11778890 ~ 11781880 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014096 tnfa coding NC_007130.7 CM002903.2 27019432 ~ 27024019 (+)