CI01000054_10129211_10147186 (SKIV2L)


Basic Information

Item Value
gene id CI01000054_10129211_10147186
gene name SKIV2L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10129211 ~ 10147422 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_10129211_10147186.mRNA
ATTTGCCCCCAGTTGGTCCTGATGATTTGCCCCTGTCTCTGCTGGAGATGGGCTGCTCTGGGAGATTTGAGCTCATCACACACCCACTGCCAAAAAATAAACCCCTGCCACCACACAGCACACTCCCTCATGGGCTTCCTCCTACATGTCTGGACTTAAAAACAGAGGTAGAAAAGCGCTTTCTGCGAGATCCTGCTTGGCTCCCAGTACATGATGTAGATGATGCCTTCCACAAGTTCCTTAAAATAAGTAAAAGGGAAAAAGAGGTGGACTCTCTCCTGCACTGCTCCCTGTCTCCACTGCACTCTGGTCTCTCCGTGGTCAGAGATCCCACCACCGGCATGCTGCTGGATTTCACTGAGGTGTTATTAGAGGACACAGCGTTGTCTGCAAAAAATTCCCTTTCATTACAAAGACAGCCTGGACCTCCGTCAGAGAGCCTGAGAGGGAGTAACACAAACTATCCTTTTCTGCCAGCTGGAATGGAAGAACTGACGTTAGAGCAGATTAAGAAAAAGTCAGAGCTGGAAGAAGACATTGACTTTGAGAAAGATTTGTTGACGGTTCCCCCAGGGCTGAAGGCTGGTATGGACTTCAGTGACAAAGAAGCCAGAACCATGAAGAGTGAGGTGAACCTGCTGTCACTCCTGTCAACTTTTGATGATGTCCTTGACGCTTTGCCAGAGGAGAAAGAGGGAGTGTCACAAAAAGAGGAGACTGTTAAACTTCCCAGAACTAACAGCTTAGAGGACCTCGGAATTAAAGATTCGGGCAACTCTCCTTCTCAGCCTCCAGCGAACACTGTAAGTCTGACTGAACAAAAGAAGAAACCGAAGGATGAAGACAAGGGAGACAATAAGAAGTGGGCCATTCCTGTGGACATCACCTCACCCTGTGAGGACTTCTACAAACGTATCCCTGATCCTGCCTTCAAGTATCCCTTTGAGCTGGACGTGTTTCAGAAGCAGGCTATTCTCCGACTCGAAGCTCATGACTCTGTCTTTGTTGCGGCCCACACCTCAGCGGGCAAGACCGTGGTGGCTGAATACGCAATTGCACTTTCCCAGAAACACATGACCAGGACCATTTACACATCCCCCATTAAGGCCTTGTCCAATCAGAAGTTCCGGGACTTCAAGAACACGTTTGGTGACGTGGGACTTTTGACTGGAGATGTCCAGCTGAATCCTGAAGCCTCTTGTCTTATCATGACCACTGAGATTTTGAGATCTATGCTTTATAATGGGTCCGAGGTCATTCGAGATTTGGAATGGGTCATTTTTGATGAGGTTCACTATATCAATGATGCAGAGAGGGGAGTGGTGTGGGAGGAAGTGCTCATCATGTTGCCAGAGCATGTTAGCATCATCCTGCTGAGTGCCACGGTGCCTAACGCAGTGGAGTTCAGTGAATGGATTGGGCGTATCAAGAAGCGGCACATCTATGTGATAAGCACAGTTAAGAGGCCTGTTCCTCTAGAGCACCATCTCTACACCGGCAACAGCACCAAGACTCAGAAGGAGCTTTTCCTCTACTACGCCGCAGTGGAAGCCAAGAAGGAACGCACAAGTAAACATGCACAATCTTTTGGCGCAAAGAATGTATCACAGCACAACACAACAGCCAGTCAGGATCGATCAGTGTGGCAGACGCTGCTGAACTATCTGTCTCAGAGGCAGCAGACTCCAGTGGTGGCGTTTACATTCTCTCGGACACGCTGTGATGAAAACGCCCGCTCTTTGACCTCTCTGGATCTCACCAGCTCTATAGAGAAGAGCGAGATACACTCGTTCCTCCAGAAGAGCCTGACCAGGCTGAGAGGAGCCGATCGGCAGTTACCGCAGATCCTGTTGATGCGTGATTTGCTGAAGAGAGGGATTGGTGTTCACCACAGCGGCATCCTGCCAATCCTGAAGGAGGTTATTGAGATGCTATTTTCCAAAGGTTTAGTAAAGGTGCTGTTTGCTACAGAGACGTTTGCCATGGGTGTGAACATGCCCGCCAGAACCGTTGTGTTCGACAGCATCCGCAAACATGACGGCACAGGTTTCAGAAACCTGCTGCCAGCCAGTCTTTGGTCTTTTTTTAGAGTCCTGCAGCCTGGGAAACCGACAGTGCTGCAATCTCAGTTCAGACTGACCTACACGATGATCCTAAATCTGCTGCGTGTGGAGGCCCTTAGGGTTACCGACATGATGAGGAGGAGCTTTTCTGAGAACCACAGGGATACGCAGACTCATGAGAAGAGAATAACTGAGCTGAGAAACATGCTCTCCTCTCTCCCTCCGCTGGACACAGAGGGGCAGTTATCTGATTTACTGTCATATTACCACACCATCACAGAGCTGCGCATCACCACAGAGACCCTGCAGCGAGCTGTGCTGGAGTCAGTAAATGGACTCAAAGCTCTGTCTGTGGGGAGGGTGGTGATAGTGAACAACAGCCAGCACCACAACGCCCTGGGAGTCATTCTACAGGTATCCAACGATGCAGTAAATCGTACATTCACCGCTCTCATTATCTGTGAGAAGGGTAATGAAGAGGCGGCGGGTGATAATCAGTCTAATAAAGTCTCACTTCACATCTACAACACTGCACTGTTTATTCCAGAGGGACCCTGCAGTCATACAGTGCAGAAACTGAAGTTGCAGGACATCTCTGCCCTCACAACCAAAACTCTCAAGGTCATTCCAGAGAGAATCATCGACAACTACAATAAAAGACAGCAGCCACGCTTCAGACTTGATCCACCAGGTCAGGCTATTTCTACAGCAACTCAGGAGCTCTTGCGATTGGCTGAGGCCAATCCGACGGGCATTACGACTCTTGACCCTGTGAATGACCTGCACCTGAAGGGTGTGGATGTGGTGGAGGGAGTGATGAGGCAAAGAGTGTTACAGGACTGTCTAAAAGACTTCCACTGTATCCACTCGCCCACCTTCACTGAACAGTTTGCACGTGTACAGGAGAGGATGAGTGTACAGGAAGAGCTTGATAAGCTTCTGTTCCTGGTGTCTGATCAGTCACTGACACTGCTGCCTGAGTACCATCAGAGAATCAAGGTGTTGGAAGCTCTGCAGTATGTAGACAGCACTGGGGCGGTTCAGCTGAAGGGACGTGTGGCGTGTCAAATCAGCAGTCATGAGCTGTTACTGACTGAACTTCTGTTTGAGAACACTCTGAGTCCTCTCGCCCCTGAGGAGAGCGCCGCCCTGCTGTCCTGCCTCGTCTTCACACAAAATACCCAGATAGACCCGCACATCACCAACACGCTACAGGAGCGTATTGGTGAGCTGCAGAGGGATTGTGGGATAGCTCAAACTGCTGAAGACTTTGTGGCCCAGTTCAAGTTTGGCCTGACTGAGGTTGTGTATTGCTGGGCAAGAGGCATGCCGTTTGCTGAGATTGCAGAGCTGACAGATGTGCAGGAGGGGACAATCGTGCGCTGTATCCAGAGGCTGGACGAGGTCCTGAAAGAAGTGAGACAAGCTGCTCGCATTGTAGGCGACTCCGTCCTGGGCAGCAAGATGGAAAGAGCCTCACTGGCCATACGCAGAGACATTGTGTTCACCGCTTCGCTCTACACACACTGAGAGACAGGACGAGGCAGAATGTGTTAATGTGTTGATGAGTGTGGAGTGGGATATAAAATAGAATGTACAGAATATGGACCTAAGAAACTGTACTTGAATGAGTGCATGTTTACATTTGAGTTGAGTATGCATGTATGAGTGAAGGAGTTGTACACTCCTCACACCTGACCAAAGTTGTGATCTCAATATGAAATGGAGGTTGACGCCAGTTATGAACTGTAATTAATTATACAGCA

Function

symbol description
skiv2l Predicted to enable RNA helicase activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay. Predicted to be part of Ski complex. Human ortholog(s) of this gene implicated in trichohepatoenteric syndrome 2. Orthologous to human SKIV2L (Ski2 like RNA helicase).

GO:

id name namespace
GO:0006401 RNA catabolic process biological_process

KEGG:

id description
K12599 SKI2, SKIV2L; antiviral helicase SKI2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_10129211_10147186.mRNA True 3829 mRNA 0.49 28 10129211 10147422

Neighbor

gene id symbol gene type direction distance location
CI01000054_10114035_10120718 ZBTB12.2 coding upstream 7424 10113730 ~ 10121787 (+)
CI01000054_10096838_10110282 NA coding upstream 17873 10096838 ~ 10111338 (+)
CI01000054_09988960_10071518 GABBR1B, GABBR1, GABBR1A coding upstream 57329 9988801 ~ 10071882 (+)
CI01000054_09929564_09940371 SH3BP5LB coding upstream 188034 9929564 ~ 9941177 (+)
CI01000054_09919245_09928118 GTF2H4 coding upstream 200811 9919245 ~ 9928400 (+)
CI01000054_10148649_10153790 PRRT1 coding downstream 1095 10148517 ~ 10154688 (+)
CI01000054_10172867_10177625 NEU1 coding downstream 25445 10172867 ~ 10178884 (+)
CI01000054_10180219_10184702 NEU1 coding downstream 32728 10180150 ~ 10184741 (+)
CI01000054_10199933_10212166 PRRC2A coding downstream 52511 10199933 ~ 10212510 (+)
CI01000054_10215898_10219704 CK2B, BRAFLDRAFT_59924, CSNK2B coding downstream 68476 10215898 ~ 10219934 (+)
G235440 NA non-coding upstream 41409 10083633 ~ 10087802 (+)
G235439 NA non-coding upstream 214911 9909632 ~ 9914300 (+)
G235433 NA non-coding upstream 276518 9849323 ~ 9852693 (+)
G235448 NA non-coding upstream 293880 9833624 ~ 9835331 (+)
G235411 NA non-coding upstream 458187 9669876 ~ 9671024 (+)
G235501 NA non-coding downstream 42010 10189432 ~ 10189653 (+)
G235502 NA non-coding downstream 42269 10189691 ~ 10189938 (+)
G235508 NA non-coding downstream 90127 10237549 ~ 10237900 (+)
G235522 NA non-coding downstream 136517 10283939 ~ 10286691 (+)
G235557 NA non-coding downstream 233292 10380714 ~ 10380915 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 1799623 8325126 ~ 8329716 (+)
G233306 NA other upstream 1824262 8304599 ~ 8304949 (+)
G233024 NA other upstream 2519318 7567523 ~ 7609893 (+)
G232870 NA other upstream 3240708 6887912 ~ 6888503 (+)
G232659 NA other upstream 3753317 6374850 ~ 6375894 (+)
G235560 NA other downstream 240714 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 1417554 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 1485554 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 1500557 11647959 ~ 11649495 (+)
G236874 NA other downstream 1666266 11813688 ~ 11816475 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00006275 NA misc CM030134.1 CM030134.1 1286829 ~ 1315558 (+)