XLOC_009884 (icn)



Basic Information


Item Value
gene id XLOC_009884
gene name icn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23431189 ~ 23432552 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00019722
ACTCGCTTGCTCTCTTTTCCTTTCACTTGTTGCCCATCGTGACCACCAGAACCACCATGGCTACGTCAGATACCCAGAAAGCAATGGCTATGCTCATTGCAACCTTCCACAAATACTCTGGAAAGGAGGGCGACAAATTGACCCTGTCCAAAGGCGAGCTGAAGGAACTGCTCTCTGCAGAGTTGGGCGACATCTTTGGGAAAACTACAGACAAGGCAGCTTTGGACAAGATATTCAAGGATCTGGATGCAAATGCTGATGGTTCTGTGGACTTTCAGGAGTACATCACATTGATTGCCTGTATCACAATGCTTTGCAATGAGTTTTTCACAGGAAAAAAATAAGTGTCCTTACAGAATATATTTGTctgtaaagaaaaaaatgaataaagatttttaatgttttgaa

Function


symbol description
icn Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be active in cytoplasm. Is expressed in several structures, including digestive system; fin; hematopoietic system; integument; and sensory system. Orthologous to several human genes including S100A4 (S100 calcium binding protein A4).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0046914 transition metal ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8599 Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be active in cytoplasm. Is expressed in several structures, including digestive system; fin; hematopoietic system; integument; and sensory system. Orthologous to several human genes including S100A4 (S100 calcium binding protein A4).

Ensembl:

ensembl_id ENSDARG00000009978

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00019722 True 408 mRNA 0.42 3 23431189 23432552

Neighbor


gene id symbol gene type direction distance location
XLOC_009883 s100w coding upstream 25034 23403602 ~ 23406155 (+)
XLOC_009882 s100a10b coding upstream 31705 23397785 ~ 23399484 (+)
XLOC_009881 krtcap2 coding upstream 38923 23326085 ~ 23392266 (+)
XLOC_009880 slc50a1 coding upstream 116311 23303859 ~ 23314878 (+)
XLOC_009879 efna1b coding upstream 133040 23282655 ~ 23298149 (+)
XLOC_009885 icn2 coding downstream 54499 23487051 ~ 23491093 (+)
XLOC_009886 snx27b coding downstream 63048 23495600 ~ 23524374 (+)
XLOC_009887 adar coding downstream 99031 23531583 ~ 23557714 (+)
XLOC_009888 kcnn3 coding downstream 166356 23598908 ~ 23719649 (+)
XLOC_009889 CR533578.1 coding downstream 174679 23607231 ~ 23607352 (+)
XLOC_009875 NA non-coding upstream 734693 22695226 ~ 22696496 (+)
XLOC_009872 NA non-coding upstream 851863 22575143 ~ 22579326 (+)
XLOC_009870 NA non-coding upstream 1102161 22327970 ~ 22329028 (+)
XLOC_009869 NA non-coding upstream 1103687 22323766 ~ 22327502 (+)
XLOC_009868 NA non-coding upstream 1317253 22022291 ~ 22113936 (+)
XLOC_009902 NA non-coding downstream 586556 24019108 ~ 24028618 (+)
XLOC_009903 NA non-coding downstream 765927 24198479 ~ 24207903 (+)
XLOC_009904 CT867948.1 non-coding downstream 1083540 24516092 ~ 24524076 (+)
XLOC_009905 NA non-coding downstream 1133182 24565734 ~ 24573801 (+)

Expression



Co-expression Network