CI01000054_10180219_10184702 (NEU1)


Basic Information

Item Value
gene id CI01000054_10180219_10184702
gene name NEU1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10180150 ~ 10184741 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_10180219_10184702.mRNA
TTATAAATAGGCTTAAGGTAAAATTACAGTAGTTACAATAGTGCACATGACTTGACAAAAGTTGCCGTCATGTATCGGACTCTTTTGTGGATTTTGCTTCTGACTGTGCTGTGTTCATTTGCGCGAAATGAAAAGATCAGTCCTGCTGTCGTTGATGAGCAGCTGCTCTGGGTAGGTGGTCAAACTGGGGAAGTTCACACCTACAGGATTCCCCTGCTCACTTTCACTTCTCAGGGGAGTCTGCTGGCTTTTGCAGAGGCCCGGAAGATGTCCTCCAAAGATATCGGAGCCAAGTTCATAGCTTTAAGACGCTCCACAGACAGAGGTGCCACCTGGTCTCCCACCTCATTTATAGTGGACGATGGTTCTCTAGCAGATGGGCTGAACCTAGGTTCGGTAGTTGTGGATGAGGAAACTGGTGCCGTGATACTCATCTACTCGTTGTGCTTCCACCGCCACCATTGCAAACCCTCCAGCACCATGATGGTGGAGAGCCTGGATGATGGATTCACCTGGAGCGCCCCACGAAACCTCAACCCTCAACTGGGGATCAAGAGTTTTGCTCCTGGACCTGGCTTCGGTATACAGAAACATCATCCACCTGCTATTGGGCGTCTGGTGGTGTGTGGCCATGGCAGCATCGCTGGAGACGGAGTGTTTTGTATTCTGAGTGATGATCATGGAAACACATGGAGATACGGAGCTGAACTGAAGAGTATTCCATACAACCAGCCCAAAAACAACCTTGACTTTGAGCCAGATGAGTGTCAGCCAGTGGAGCTGGATGACGGCAGCATCGTGATCAATGTGCGTAACAATAAGAACTATCACTGCCGTTGTCGTATGGTTGCACGCAGTCTGGATGGAGGGGAGTCTCTGCCGGTGGAGGAGCTGGTGTTTGATCACACACTGGAAGATCCTGCTGTTGCAGCTGGAGCGTTAGAGAAGGAAGGAGTGCTCTACTTCACCAACCCAGCCAACTCTAAAAGCAGAGTCAACCTCACCCTTCGCTGGTCTCTGAATCACGGTAAATCATGGGTGACAGATACTCTCAAGATCTGGGCGGGGCCAAGTGGATACTCTTGCATGACATCACTTAAAGGCAATGAAACTGAGGATCATAAATACATCTATGTCATCTTTGAGAAAGGCCAGAAAGACTATTTTGAGTCCATCTCCTTTGTGAAAATTGACTTGTACAGTGACCAATGAAGAAAGGCATTGATGGGCTTATCAAAAAGGTGTTGTTTA

Function

symbol description
neu1 Predicted to enable exo-alpha-sialidase activity. Predicted to be involved in ganglioside catabolic process and oligosaccharide catabolic process. Predicted to act upstream of or within lipid catabolic process. Predicted to be active in lysosome and membrane. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human NEU1 (neuraminidase 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_10180219_10184702.mRNA True 1251 mRNA 0.48 6 10180150 10184741

Neighbor

gene id symbol gene type direction distance location
CI01000054_10172867_10177625 NEU1 coding upstream 1266 10172867 ~ 10178884 (+)
CI01000054_10148649_10153790 PRRT1 coding upstream 25462 10148517 ~ 10154688 (+)
CI01000054_10129211_10147186 SKIV2L coding upstream 32728 10129211 ~ 10147422 (+)
CI01000054_10114035_10120718 ZBTB12.2 coding upstream 58363 10113730 ~ 10121787 (+)
CI01000054_10096838_10110282 NA coding upstream 68812 10096838 ~ 10111338 (+)
CI01000054_10199933_10212166 PRRC2A coding downstream 15192 10199933 ~ 10212510 (+)
CI01000054_10215898_10219704 CK2B, BRAFLDRAFT_59924, CSNK2B coding downstream 31157 10215898 ~ 10219934 (+)
CI01000054_10246428_10247072 NA coding downstream 61687 10246428 ~ 10247123 (+)
CI01000054_10420267_10420899 NA coding downstream 235415 10420156 ~ 10422089 (+)
CI01000054_10467566_10471168 NA coding downstream 282825 10467566 ~ 10471477 (+)
G235440 NA non-coding upstream 92348 10083633 ~ 10087802 (+)
G235439 NA non-coding upstream 265850 9909632 ~ 9914300 (+)
G235433 NA non-coding upstream 327457 9849323 ~ 9852693 (+)
G235448 NA non-coding upstream 344819 9833624 ~ 9835331 (+)
G235411 NA non-coding upstream 509126 9669876 ~ 9671024 (+)
G235501 NA non-coding downstream 4691 10189432 ~ 10189653 (+)
G235502 NA non-coding downstream 4950 10189691 ~ 10189938 (+)
G235508 NA non-coding downstream 52808 10237549 ~ 10237900 (+)
G235522 NA non-coding downstream 99198 10283939 ~ 10286691 (+)
G235557 NA non-coding downstream 195973 10380714 ~ 10380915 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 1850562 8325126 ~ 8329716 (+)
G233306 NA other upstream 1875201 8304599 ~ 8304949 (+)
G233024 NA other upstream 2570257 7567523 ~ 7609893 (+)
G232870 NA other upstream 3291647 6887912 ~ 6888503 (+)
G232659 NA other upstream 3804256 6374850 ~ 6375894 (+)
G235560 NA other downstream 203395 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 1380235 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 1448235 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 1463238 11647959 ~ 11649495 (+)
G236874 NA other downstream 1628947 11813688 ~ 11816475 (+)

Expression


Co-expression Network